Changeset 4044 for branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/SETTE/all_functions.sh

Timestamp:

2013-09-25T16:33:22+02:00 (11 years ago)

Author:

clevy

Message:

Configuration setting/add SETTE compatibility, see ticket:#1074

File:

• branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/SETTE/all_functions.sh (modified) (4 diffs)

branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/SETTE/all_functions.sh

@@ -111 +111 @@
    if [ ${#VAR_NAME} -eq 0 ] 
    then
-      echo "doing \"set_namelist $@\". "
-      echo "variable: \"$2\" is empty"
-      echo "control that variable $2 is in \"${EXE_DIR}/$1\" "
-      echo "exit"
-      echo "error in executing script : set_namelist $@" >> ${SETTE_DIR}/output.sette
-      echo "....." >> ${SETTE_DIR}/output.sette
-      exit 1
+      echo "doing \"set_namelist $@\". "  >> ${SETTE_DIR}/output.sette
+      echo "variable: \"$2\" not found in \"${EXE_DIR}/$1\" "  >> ${SETTE_DIR}/output.sette
+                NAMREF=$( basename $1 _cfg )_ref
+      echo "doing more : search in ${EXE_DIR}/$NAMREF " >> ${SETTE_DIR}/output.sette
+                VAR_NAME=$( supergrep $2 ${EXE_DIR}/$NAMREF )
+           if [ ${#VAR_NAME} -eq 0 ] 
+           then
+                    echo " variable $VAR_NAME not found in ${EXE_DIR}/$1 nor in ${EXE_DIR}/$NAMREF "
+                    echo " check your variable name "
+            echo "exit"
+            echo "error in executing script : set_namelist $@" >> ${SETTE_DIR}/output.sette
+            echo "....." >> ${SETTE_DIR}/output.sette
+            exit 1
+                fi
+                LINEVAR=$( grep -s -n "$VAR_NAME" ${EXE_DIR}/$NAMREF | awk -F: '{ { print $1} }' )
+                echo " $VAR_NAME found in ${EXE_DIR}/$NAMREF at line $LINEVAR " >> ${SETTE_DIR}/output.sette
+#   search for namelist group name
+                NAMGRP=$( head -n$LINEVAR ${EXE_DIR}/$NAMREF | grep --line-buffered "^&nam" | tail -1 | awk -F" " '{ { print $1} }' ) 
+                echo " variable $VAR_NAME will be added in $NAMGRP namelist-group of namelist file ${EXE_DIR}/$1 " >> ${SETTE_DIR}/output.sette
+# Add $VARNAME in namelist file ${EXE_DIR}/$1 in namelist group $NAMGRP
+
+                sed "/${NAMGRP} /a\ 
+${VAR_NAME} 
+ " ${EXE_DIR}/$1 > ${EXE_DIR}/$1.tmp
+# if file not empty replace ${EXE_DIR}/$1
+                if [ -s ${EXE_DIR}/$1.tmp ] ; then
+                   mv ${EXE_DIR}/$1.tmp ${EXE_DIR}/$1 
+                else
+                echo "file ${EXE_DIR}/$1.tmp is empty. sed command went wrong "; exit 200
+                fi
    fi
+
         sed -e "s:${VAR_NAME}.*:${VAR_NAME}:" ${EXE_DIR}/$1 > ${EXE_DIR}/$1.tmp
         mv ${EXE_DIR}/$1.tmp ${EXE_DIR}/$1
@@ -151 +175 @@
 ################################################################
 # SMALL DEBUG
+    if [ ! -r ${EXE_DIR}/ocean.output ]
+        then
+        grep "E R R O R" ${EXE_DIR}/ocean.output && echo "Some ERRORS at execution time, see ${EXE_DIR}/ocean.output"
+        exit 2
+    fi
+
     if [ ! -r ${EXE_DIR}/time.step ]
         then
@@ -158 +188 @@
     else
         echo "file time.step exists"  >> ${SETTE_DIR}/output.sette
-        echo "ok model run"   >> ${SETTE_DIR}/output.sette
-    fi
+        echo "execution of model time step loop started"   >> ${SETTE_DIR}/output.sette
+    fi
+
 ################################################################
 
@@ -191 +222 @@
     echo "saving ocean & ice output, solver.stat, tracer.stat files ...." >> ${SETTE_DIR}/output.sette
     echo "            " >> ${SETTE_DIR}/output.sette
-    [ -f ${EXE_DIR}/*ocean.output ] && cp ${EXE_DIR}/*ocean.output ${NEMO_VALID}/.
-    [ -f ${EXE_DIR}/*solver.stat ] && cp ${EXE_DIR}/*solver.stat ${NEMO_VALID}/.
-    [ -f ${EXE_DIR}/*tracer.stat ] && cp ${EXE_DIR}/*tracer.stat ${NEMO_VALID}/.
+    [ -f ${EXE_DIR}/ocean.output ] && cp ${EXE_DIR}/*ocean.output ${NEMO_VALID}/.
+    [ -f ${EXE_DIR}/solver.stat ] && cp ${EXE_DIR}/*solver.stat ${NEMO_VALID}/.
+    [ -f ${EXE_DIR}/output.namelist.dyn ] && cp ${EXE_DIR}/*output.nam* ${NEMO_VALID}/.
+    [ -f ${EXE_DIR}/tracer.stat ] && cp ${EXE_DIR}/*tracer.stat ${NEMO_VALID}/.
+
     if [ -n "$(ls ${NEMO_VALID}/*solver*)" ] ; then
    echo "moved solver.stat in ${NEMO_VALID} directory"  >> ${SETTE_DIR}/output.sette