Changeset 7075 for branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM
- Timestamp:
- 2016-10-24T14:46:59+02:00 (8 years ago)
- Location:
- branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED
- Files:
-
- 5 added
- 4 deleted
- 5 edited
Legend:
- Unmodified
- Added
- Removed
-
branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/field_def_bgc.xml
r6164 r7075 11 11 ============================================================================================================ 12 12 --> 13 <field_definition level="1" prec=" 4" operation="average" enabled=".TRUE." default_value="1.e20" > <!-- time step automaticaly defined -->13 <field_definition level="1" prec="8" operation="average" enabled=".TRUE." default_value="1.e20" > <!-- time step automaticaly defined --> 14 14 15 15 <!-- … … 105 105 <field id="CFC11_E3T" long_name="CFC11 * E3T" unit="umol/m2" > CFC11 * e3t </field > 106 106 <!-- Bomb C14 : variables available with key_c14b --> 107 <field id="C14B" long_name="Bomb C14 Concentration"unit="1" />107 <field id="C14B" long_name="Bomb C14 Concentration" unit="1" /> 108 108 <field id="C14B_E3T" long_name="C14B * E3T" unit="m" > C14B * e3t </field > 109 <!-- AGE : variables available with key_age --> 110 <field id="Age" long_name="Sea Water Age Since Surface contact" standard_name="sea_water_age_since_surface_contact" unit="yr" /> 111 <field id="Age_e3t" long_name="Age * e3t" unit="yr * m" > Age * e3t </field > 109 112 </field_group> 110 113 … … 453 456 <field id= "INT_DET" long_name="Vertically integrated Det" unit="mmolN/m2" /> 454 457 <field id= "INT_DTC" long_name="Vertically integrated Dtc" unit="mmolC/m2" /> 455 <field id= "DMS_SURF" long_name="DMS Surface Concentration" unit=" mol/m3" />456 <field id= "DMS_ANDR" long_name="DMS Surface Concentration, Anderson" unit=" mol/m3" />457 <field id= "DMS_SIMO" long_name="DMS Surface Concentration, SimoDach" unit=" mol/m3" />458 <field id= "DMS_ARAN" long_name="DMS Surface Concentration, AranamiT" unit=" mol/m3" />459 <field id= "DMS_HALL" long_name="DMS Surface Concentration, Halloran" unit=" mol/m3" />458 <field id= "DMS_SURF" long_name="DMS Surface Concentration" unit="nmol/L" /> 459 <field id= "DMS_ANDR" long_name="DMS Surface Concentration, Anderson" unit="nmol/L" /> 460 <field id= "DMS_SIMO" long_name="DMS Surface Concentration, SimoDach" unit="nmol/L" /> 461 <field id= "DMS_ARAN" long_name="DMS Surface Concentration, AranamiT" unit="nmol/L" /> 462 <field id= "DMS_HALL" long_name="DMS Surface Concentration, Halloran" unit="nmol/L" /> 460 463 461 464 <field id= "TPP3" long_name="Total primary production 3D" unit="mmolN/m3/d" grid_ref="grid_T_3D" /> … … 510 513 511 514 <field_group id="groupIDTRA_dia" > 512 513 514 515 <field field_ref="qtrIDTRA" name="qtrIDTRA" /> 516 <field field_ref="qintIDTRA" name="qintIDTRA" /> 517 <field field_ref="invIDTRA" name="invIDTRA" /> 515 518 </field_group> 516 519 517 520 <field_group id="groupCFC" > 518 <field field_ref="CFC11" name="CFC11"/>521 <field field_ref="CFC11" name="CFC11" /> 519 522 </field_group> 520 523 521 524 <field_group id="groupCFC_dia" > 522 <field field_ref="qtrCFC11" name="qtrCFC11" /> 523 <field field_ref="qintCFC11" name="qintCFC11" /> 525 <field field_ref="qtrCFC11" name="qtrCFC11" /> 526 <field field_ref="qintCFC11" name="qintCFC11" /> 527 </field_group> 528 529 <field_group id="groupAGE" > 530 <field field_ref="Age" name="Age" /> 524 531 </field_group> 525 532 -
branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/field_def_dyn.xml
r6057 r7075 23 23 <field_group id="grid_T" grid_ref="grid_T_2D" > 24 24 <field id="e3t" long_name="T-cell thickness" standard_name="cell_thickness" unit="m" grid_ref="grid_T_3D"/> 25 <field id="e3t_0" long_name="Initial T-cell thickness" standard_name="ref_cell_thickness" unit="m" grid_ref="grid_T_3D"/> 25 26 26 27 <field id="toce" long_name="temperature" standard_name="sea_water_potential_temperature" unit="degC" grid_ref="grid_T_3D"/> … … 53 54 <field id="mldr10_1max" long_name="Max of Mixed Layer Depth (dsigma = 0.01 wrt 10m)" field_ref="mldr10_1" operation="maximum" /> 54 55 <field id="mldr10_1min" long_name="Min of Mixed Layer Depth (dsigma = 0.01 wrt 10m)" field_ref="mldr10_1" operation="minimum" /> 56 <field id="mldzint_1" long_name="Mixed Layer Depth interpolated" standard_name="ocean_mixed_layer_thickness" unit="m" /> 57 <field id="mldzint_2" long_name="Mixed Layer Depth interpolated" standard_name="ocean_mixed_layer_thickness" unit="m" /> 58 <field id="mldzint_3" long_name="Mixed Layer Depth interpolated" standard_name="ocean_mixed_layer_thickness" unit="m" /> 59 <field id="mldzint_4" long_name="Mixed Layer Depth interpolated" standard_name="ocean_mixed_layer_thickness" unit="m" /> 60 <field id="mldzint_5" long_name="Mixed Layer Depth interpolated" standard_name="ocean_mixed_layer_thickness" unit="m" /> 61 <field id="mldhtc_1" long_name="Mixed Layer Depth integrated heat content" standard_name="integral_of_sea_water_potential_temperature_wrt_depth_expressed_as_heat_content" unit="J/m2" /> 62 <field id="mldhtc_2" long_name="Mixed Layer Depth integrated heat content" standard_name="integral_of_sea_water_potential_temperature_wrt_depth_expressed_as_heat_content" unit="J/m2" /> 63 <field id="mldhtc_3" long_name="Mixed Layer Depth integrated heat content" standard_name="integral_of_sea_water_potential_temperature_wrt_depth_expressed_as_heat_content" unit="J/m2" /> 64 <field id="mldhtc_4" long_name="Mixed Layer Depth integrated heat content" standard_name="integral_of_sea_water_potential_temperature_wrt_depth_expressed_as_heat_content" unit="J/m2" /> 65 <field id="mldhtc_5" long_name="Mixed Layer Depth integrated heat content" standard_name="integral_of_sea_water_potential_temperature_wrt_depth_expressed_as_heat_content" unit="J/m2" /> 55 66 <field id="heatc" long_name="Heat content vertically integrated" standard_name="integral_of_sea_water_potential_temperature_wrt_depth_expressed_as_heat_content" unit="J/m2" /> 56 67 <field id="saltc" long_name="Salt content vertically integrated" unit="1e-3*kg/m2" /> … … 59 70 <field id="alpha" long_name="thermal expansion" unit="degC-1" grid_ref="grid_T_3D" /> 60 71 <field id="beta" long_name="haline contraction" unit="1e3" grid_ref="grid_T_3D" /> 61 <field id="bn2" long_name="squared Brunt-Vaisala frequency" unit="s-1" grid_ref="grid_T_3D" />62 72 <field id="rhop" long_name="potential density (sigma0)" standard_name="sea_water_sigma_theta" unit="kg/m3" grid_ref="grid_T_3D" /> 63 73 … … 174 184 <field_group id="SBC" grid_ref="grid_T_2D" > <!-- time step automaticaly defined based on nn_fsbc --> 175 185 <field id="empmr" long_name="Net Upward Water Flux" standard_name="water_flux_out_of_sea_ice_and_sea_water" unit="kg/m2/s" /> 186 <field id="empbmr" long_name="Net Upward Water Flux at pre. tstep" standard_name="water_flux_out_of_sea_ice_and_sea_water" unit="kg/m2/s" /> 187 <field id="emp_oce" long_name="Evap minus Precip over ocean" standard_name="evap_minus_precip_over_sea_water" unit="kg/m2/s" /> 188 <field id="emp_ice" long_name="Evap minus Precip over ice" standard_name="evap_minus_precip_over_sea_ice" unit="kg/m2/s" /> 176 189 <field id="saltflx" long_name="Downward salt flux" unit="1e-3/m2/s" /> 177 190 <field id="fmmflx" long_name="Water flux due to freezing/melting" unit="kg/m2/s" /> … … 193 206 194 207 <!-- * variable related to ice shelf forcing * --> 208 <field id="berg_calve" long_name="Iceberg calving" unit="kg/m2/s" /> 195 209 <field id="fwfisf" long_name="Ice shelf melting" unit="kg/m2/s" /> 196 210 <field id="qisf" long_name="Ice Shelf Heat Flux" unit="W/m2" /> … … 274 288 <field id="micesalt" long_name="Mean ice salinity" unit="1e-3" /> 275 289 <field id="miceage" long_name="Mean ice age" unit="years" /> 290 <field id="alb_ice" long_name="Mean albedo over sea ice" unit="" /> 291 <field id="albedo" long_name="Mean albedo over sea ice and ocean" unit="" /> 276 292 277 293 <field id="iceage_cat" long_name="Ice age for categories" unit="days" axis_ref="ncatice" /> … … 311 327 <field id="sfxsni" long_name="salt flux from snow-ice formation" unit="1e-3*kg/m2/day" /> 312 328 <field id="sfxopw" long_name="salt flux from open water ice formation" unit="1e-3*kg/m2/day" /> 329 <field id="sfxsub" long_name="salt flux from sublimation" unit="1e-3*kg/m2/day" /> 313 330 <field id="sfx" long_name="salt flux total" unit="1e-3*kg/m2/day" /> 314 331 … … 324 341 <field id="vfxsub" long_name="snw sublimation" unit="m/day" /> 325 342 <field id="vfxspr" long_name="snw precipitation on ice" unit="m/day" /> 343 <field id="vfxthin" long_name="daily thermo ice prod. for thin ice(<20cm) + open water" unit="m/day" /> 326 344 327 345 <field id="afxtot" long_name="area tendency (total)" unit="day-1" /> … … 365 383 <field_group id="grid_U" grid_ref="grid_U_2D"> 366 384 <field id="e3u" long_name="U-cell thickness" standard_name="cell_thickness" unit="m" grid_ref="grid_U_3D" /> 385 <field id="e3u_0" long_name="Initial U-cell thickness" standard_name="ref_cell_thickness" unit="m" grid_ref="grid_U_3D"/> 367 386 <field id="utau" long_name="Wind Stress along i-axis" standard_name="surface_downward_x_stress" unit="N/m2" /> 368 387 <field id="uoce" long_name="ocean current along i-axis" standard_name="sea_water_x_velocity" unit="m/s" grid_ref="grid_U_3D" /> … … 400 419 <field_group id="grid_V" grid_ref="grid_V_2D"> 401 420 <field id="e3v" long_name="V-cell thickness" standard_name="cell_thickness" unit="m" grid_ref="grid_V_3D" /> 421 <field id="e3v_0" long_name="Initial V-cell thickness" standard_name="ref_cell_thickness" unit="m" grid_ref="grid_V_3D"/> 402 422 <field id="vtau" long_name="Wind Stress along j-axis" standard_name="surface_downward_y_stress" unit="N/m2" /> 403 423 <field id="voce" long_name="ocean current along j-axis" standard_name="sea_water_y_velocity" unit="m/s" grid_ref="grid_V_3D" /> … … 441 461 <field id="woce_eiv" long_name="EIV ocean vertical velocity" standard_name="bolus_upward_sea_water_velocity" unit="m/s" /> 442 462 443 <!-- woce_eiv: available with key_trabbl_adv -->444 463 <field id="avt" long_name="vertical eddy diffusivity" standard_name="ocean_vertical_heat_diffusivity" unit="m2/s" /> 464 <field id="logavt" long_name="logarithm of vertical eddy diffusivity" standard_name="ocean_vertical_heat_diffusivity" unit="m2/s" /> 445 465 <field id="avm" long_name="vertical eddy viscosity" standard_name="ocean_vertical_momentum_diffusivity" unit="m2/s" /> 446 466 447 467 <!-- avs: available with key_zdfddm --> 448 468 <field id="avs" long_name="salt vertical eddy diffusivity" standard_name="ocean_vertical_salt_diffusivity" unit="m2/s" /> 469 <field id="logavs" long_name="logarithm of salt vertical eddy diffusivity" standard_name="ocean_vertical_heat_diffusivity" unit="m2/s" /> 449 470 450 471 <!-- avt_evd and avm_evd: available with ln_zdfevd --> … … 455 476 <field id="av_tide" long_name="tidal vertical diffusivity" standard_name="ocean_vertical_tracer_diffusivity_due_to_tides" unit="m2/s" /> 456 477 478 <!-- variables available with key_zdftmx_new --> 479 <field id="av_ratio" long_name="S over T diffusivity ratio" standard_name="salinity_over_temperature_diffusivity_ratio" unit="1" /> 480 <field id="av_wave" long_name="wave-induced vertical diffusivity" standard_name="ocean_vertical_tracer_diffusivity_due_to_internal_waves" unit="m2/s" /> 481 <field id="bn2" long_name="squared Brunt-Vaisala frequency" standard_name="squared_brunt_vaisala_frequency" unit="s-1" /> 482 <field id="bflx_tmx" long_name="wave-induced buoyancy flux" standard_name="buoyancy_flux_due_to_internal_waves" unit="W/kg" /> 483 <field id="pcmap_tmx" long_name="power consumed by wave-driven mixing" standard_name="vertically_integrated_power_consumption_by_wave_driven_mixing" unit="W/m2" grid_ref="grid_W_2D" /> 484 <field id="emix_tmx" long_name="power density available for mixing" standard_name="power_available_for_mixing_from_breaking_internal_waves" unit="W/kg" /> 485 457 486 <!-- variables available with key_diaar5 --> 458 487 <field id="w_masstr" long_name="vertical mass transport" standard_name="upward_ocean_mass_transport" unit="kg/s" /> … … 462 491 <field id="aht2d" long_name="lateral eddy diffusivity" standard_name="ocean_tracer_xy_laplacian_diffusivity" unit="m2/s" grid_ref="grid_W_2D" /> 463 492 <field id="aht2d_eiv" long_name="EIV lateral eddy diffusivity" standard_name="ocean_tracer_bolus_laplacian_diffusivity" unit="m2/s" grid_ref="grid_W_2D" /> 493 <!-- variables added for nn_etau revision testing --> 494 <field id="htau" long_name="e-decay length scale of nn_etau TKE" unit="m" grid_ref="grid_W_2D" /> 495 <field id="tke" long_name="Turbulent Kinetic Energy" unit="m2/s2" /> 496 <field id="tke_niw" long_name="Turbulent Kinetic Energy due to near-inertial wave breaking" unit="m2/s2" /> 464 497 </field_group> 465 498 499 <!-- product fields --> 500 <field_group id="diaprod"> 501 <field id="ut" long_name="product_of_sea_water_x_velocity_and_potential_temperature" unit="degC m/s" grid_ref="grid_U_3D" /> 502 <field id="ut_e3u" long_name="product_of_sea_water_x_velocity_and_potential_temperature * e3u" unit="degC m2/s" grid_ref="grid_U_3D" > ut * e3u </field > 503 <field id="us" long_name="product_of_sea_water_x_velocity_and_salinity" unit="PSU m/s" grid_ref="grid_U_3D" /> 504 <field id="us_e3u" long_name="product_of_sea_water_x_velocity_and_salinity * e3u" unit="PSU m2/s" grid_ref="grid_U_3D" > us * e3u </field > 505 <field id="urhop" long_name="product_of_sea_water_x_velocity_and_potential_density" unit="(kg/m3).(m/s)" grid_ref="grid_U_3D" /> 506 <field id="urhop_e3u" long_name="product_of_sea_water_x_velocity_and_potential_density * e3u" unit="(kg/m3).(m2/s)" grid_ref="grid_U_3D" > urhop * e3u </field > 507 <field id="vt" long_name="product_of_sea_water_y_velocity_and_potential_temperature" unit="degC m/s" grid_ref="grid_V_3D" /> 508 <field id="vt_e3v" long_name="product_of_sea_water_y_velocity_and_potential_temperature * e3v" unit="degC m2/s" grid_ref="grid_V_3D" > vt * e3v </field > 509 <field id="vs" long_name="product_of_sea_water_y_velocity_and_salinity" unit="PSU m/s" grid_ref="grid_V_3D" /> 510 <field id="vs_e3v" long_name="product_of_sea_water_y_velocity_and_salinity * e3t" unit="PSU m2/s" grid_ref="grid_V_3D" > vs * e3v </field > 511 <field id="vrhop" long_name="product_of_sea_water_y_velocity_and_potential_density" unit="(kg/m3).(m/s)" grid_ref="grid_V_3D" /> 512 <field id="vrhop_e3v" long_name="product_of_sea_water_y_velocity_and_potential_density * e3t" unit="(kg/m3).(m2/s)" grid_ref="grid_V_3D" > vrhop * e3v </field > 513 <field id="wt" long_name="product_of_upward_sea_water_velocity_and_potential_temperature" unit="degC m/s" grid_ref="grid_W_3D" /> 514 <field id="ws" long_name="product_of_upward_sea_water_velocity_and_salinity" unit="PSU m/s" grid_ref="grid_W_3D" /> 515 <field id="wrhop" long_name="product_of_upward_sea_water_velocity_and_potential_density" unit="(kg/m3).(m/s)" grid_ref="grid_W_3D" /> 516 </field_group> 517 466 518 <!-- scalar variables available with key_diaar5 --> 467 519 … … 527 579 <field id="ibgsfxbom" long_name="global mean salt flux (thermo)" unit="1e-3*m/day" /> 528 580 <field id="ibgsfxsum" long_name="global mean salt flux (thermo)" unit="1e-3*m/day" /> 581 <field id="ibgsfxsub" long_name="global mean salt flux (thermo)" unit="1e-3*m/day" /> 529 582 530 583 <field id="ibghfxdhc" long_name="Heat content variation in snow and ice" unit="W" /> … … 563 616 <!-- variables available with iceberg trajectories --> 564 617 565 <field_group id="icbvar" domain_ref="grid_T" > 618 <field_group id="icbvar" grid_ref="grid_T_2D" > 619 <field id="berg_total_melt" long_name="icb melt rate 2 of icebergs" unit="kg/m2/s" /> 620 <field id="berg_total_heat_flux" long_name="icb latent heat of melting of icebergs" unit="kg/m2/s" /> 566 621 <field id="berg_melt" long_name="icb melt rate of icebergs" unit="kg/m2/s" /> 567 622 <field id="berg_buoy_melt" long_name="icb buoyancy component of iceberg melt rate" unit="kg/m2/s" /> … … 730 785 <field id="vtrd_atf" long_name="j-trend: asselin time filter trend" unit="m/s^2" /> 731 786 </field_group> 787 732 788 733 789 <!-- … … 810 866 </field_group> 811 867 812 </field_definition> 813 868 <field_group id="groupT1" > 869 <field field_ref="sst" name="sosstsst" standard_name="sea_surface_temperature" /> 870 <field field_ref="sss" name="sossssss" standard_name="sea_surface_salinity" /> 871 <field field_ref="ssh" name="sossheig" standard_name="sea_surface_height_above_geoid" /> 872 <field field_ref="empmr" name="sowaflup" standard_name="water_flux_out_of_sea_ice_and_sea_water" /> 873 <field field_ref="qt" name="sohefldo" standard_name="surface_downward_heat_flux_in_sea_water" /> 874 </field_group> 875 876 <field_group id="groupT2" > 877 <field field_ref="toce" name="votemper" operation="instant" freq_op="1d" > @toce_e3t / @e3t </field> 878 <field field_ref="soce" name="vosaline" operation="instant" freq_op="1d" > @soce_e3t / @e3t </field> 879 <field field_ref="ssh" name="sossheig" standard_name="sea_surface_height_above_geoid" /> 880 <field field_ref="empmr" name="sowaflup" standard_name="water_flux_out_of_sea_ice_and_sea_water" /> 881 <field field_ref="runoffs" name="sorunoff" standard_name="" /> 882 <field field_ref="saltflx" name="sosafldo" standard_name="salt_flux_into_sea_water" /> 883 <field field_ref="qt" name="sohefldo" standard_name="surface_downward_heat_flux_in_sea_water" /> 884 <field field_ref="qsr" name="soshfldo" standard_name="downwelling_photosynthetic_radiative_flux_in_sea_water" /> 885 <field field_ref="mldkz5" name="somixhgt" standard_name="ocean_mixed_layer_thickness_defined_by_vertical_tracer_diffusivity" /> 886 <field field_ref="mldr10_1" name="somxl010" standard_name="ocean_mixed_layer_thickness_defined_by_sigma_theta" /> 887 <field field_ref="ice_cover" name="soicecov" standard_name="sea_ice_area_fraction" /> 888 <field field_ref="wspd" name="sowindsp" standard_name="wind_speed" /> 889 <field field_ref="qrp" name="sohefldp" standard_name="heat_flux_into_sea_water_due_to_newtonian_relaxation" /> 890 <field field_ref="erp" name="sowafldp" standard_name="water_flux_out_of_sea_water_due_to_newtonian_relaxation" /> 891 <field field_ref="qisf" name="sohflisf" standard_name="" /> 892 <field field_ref="fwfisf" name="sowflisf" standard_name="" /> 893 </field_group> 894 895 <field_group id="SPIN-UP_T" > 896 <field field_ref="e3t" name="e3t" standard_name="cell_thickness" /> 897 <field field_ref="toce" name="votemper" operation="average" freq_op="10d" > @toce_e3t / @e3t </field> 898 <field field_ref="toce" name="votemper2" operation="average" freq_op="10d" > @toce * @toce_e3t / @e3t </field> 899 <field field_ref="soce" name="vosaline" operation="average" freq_op="10d" > @soce_e3t / @e3t </field> 900 <field field_ref="soce" name="vosaline2" operation="average" freq_op="10d" > @soce * @soce_e3t / @e3t </field> 901 <field field_ref="ttrd_ldf" name="ttrd_ldf" standard_name="tendency_of_sea_water_temperature_due_to_horizontal_mixing"/> 902 <field field_ref="ttrd_zdf" name="ttrd_zdf" standard_name="tendency_of_sea_water_temperature_due_to_vertical_mixing"/> 903 <field field_ref="strd_ldf" name="strd_ldf" standard_name="tendency_of_sea_water_salinity_due_to_horizontal_mixing" /> 904 <field field_ref="strd_zdf" name="strd_zdf" standard_name="tendency_of_sea_water_salinity_due_to_vertical_mixing" /> 905 <field field_ref="ssh" name="sossheig" standard_name="sea_surface_height_above_geoid" /> 906 <field field_ref="ssh2" name="zossq" standard_name="square_of_sea_surface_height_above_geoid" /> 907 <field field_ref="empmr" name="sowaflup" standard_name="water_flux_out_of_sea_ice_and_sea_water" /> 908 <field field_ref="saltflx" name="sosafldo" standard_name="salt_flux_into_sea_water" /> 909 <field field_ref="qt" name="sohefldo" standard_name="surface_downward_heat_flux_in_sea_water" /> 910 <field field_ref="qsr" name="soshfldo" standard_name="downwelling_photosynthetic_radiative_flux_in_sea_water" /> 911 <field field_ref="mldkz5" name="somixhgt" standard_name="ocean_mixed_layer_thickness_defined_by_vertical_tracer_diffusivity" /> 912 <field field_ref="mldr10_1" name="somxl010" standard_name="ocean_mixed_layer_thickness_defined_by_sigma_theta" /> 913 <field field_ref="mldzint_1" name="sokaraml" /> 914 <field field_ref="mldzint_2" name="somlddbm" /> 915 <field field_ref="ice_cover" name="soicecov" standard_name="sea_ice_area_fraction" /> 916 <field field_ref="wspd" name="sowindsp" standard_name="wind_speed" /> 917 <field field_ref="qisf" name="sohflisf" standard_name="" /> 918 <field field_ref="fwfisf" name="sowflisf" standard_name="" /> 919 <field field_ref="berg_total_melt" name="berg_total_melt" standard_name="" /> 920 <field field_ref="berg_total_heat_flux" name="berg_total_heat_flux" standard_name="" /> 921 <field field_ref="runoffs" name="sorunoff" standard_name="water_flux_into_sea_water_from_rivers" /> 922 </field_group> 923 924 <field_group id="groupU1" > 925 <field field_ref="ssu" name="sozocrtx" standard_name="sea_surface_eastward_sea_water_velocity" /> 926 <field field_ref="utau" name="sozotaux" standard_name="surface_downward_x_stress" /> 927 </field_group> 928 929 <field_group id="groupU2" > 930 <field field_ref="uoce" name="vozocrtx" operation="instant" freq_op="1d" > @uoce_e3u / @e3u </field> 931 <field field_ref="utau" name="sozotaux" standard_name="surface_downward_x_stress" /> 932 </field_group> 933 934 <field_group id="SPIN-UP_U" > 935 <field field_ref="e3u" name="e3u" standard_name="cell_thickness" /> 936 <field field_ref="uoce" name="vozocrtx" operation="average" freq_op="10d" > @uoce_e3u / @e3u </field> 937 <field field_ref="uoce" name="vozocrtx2" operation="average" freq_op="10d" > @uoce * @uoce_e3u / @e3u </field> 938 <field field_ref="ut" name="ut" operation="average" freq_op="10d" > @ut_e3u / @e3u </field> 939 <field field_ref="us" name="us" operation="average" freq_op="10d" > @us_e3u / @e3u </field> 940 <field field_ref="utau" name="sozotaux" standard_name="surface_downward_x_stress" /> 941 </field_group> 942 943 <field_group id="groupV1" > 944 <field field_ref="ssv" name="somecrty" standard_name="sea_surface_northward_sea_water_velocity" /> 945 <field field_ref="vtau" name="sometauy" standard_name="surface_downward_y_stress" /> 946 </field_group> 947 948 <field_group id="groupV2" > 949 <field field_ref="voce" name="vomecrty" operation="instant" freq_op="1d" > @voce_e3v / @e3v </field> 950 <field field_ref="vtau" name="sometauy" standard_name="surface_downward_y_stress" /> 951 </field_group> 952 953 <field_group id="SPIN-UP_V" > 954 <field field_ref="e3v" name="e3v" standard_name="cell_thickness" /> 955 <field field_ref="voce" name="vomecrty" operation="average" freq_op="10d" > @voce_e3v / @e3v </field> 956 <field field_ref="voce" name="vomecrty2" operation="average" freq_op="10d" > @voce * @voce_e3v / @e3v </field> 957 <field field_ref="vt" name="vt" operation="average" freq_op="10d" > @vt_e3v / @e3v </field> 958 <field field_ref="vs" name="vs" operation="average" freq_op="10d" > @vs_e3v / @e3v </field> 959 <field field_ref="vtau" name="sometauy" standard_name="surface_downward_y_stress" /> 960 </field_group> 961 962 <field_group id="groupW2" > 963 <field field_ref="woce" name="vovecrtz" standard_name="upward_sea_water_velocity" /> 964 <field field_ref="avt" name="votkeavt" standard_name="ocean_vertical_heat_diffusivity" /> 965 <field field_ref="avm" name="votkeavm" standard_name="ocean_vertical_momentum_diffusivity" /> 966 <field field_ref="aht2d" name="soleahtw" standard_name="vertical_component_of_ocean_xy_tracer_diffusivity" /> 967 </field_group> 968 969 <field_group id="SPIN-UP_W" > 970 <field field_ref="woce" name="vovecrtz" standard_name="upward_sea_water_velocity" /> 971 <field field_ref="wt" name="wt" standard_name="" /> 972 <field field_ref="ws" name="ws" standard_name="" /> 973 <field field_ref="avt" name="votkeavt" standard_name="ocean_vertical_heat_diffusivity" /> 974 <field field_ref="avm" name="votkeavm" standard_name="ocean_vertical_momentum_diffusivity" /> 975 <field field_ref="aht2d" name="soleahtw" standard_name="vertical_component_of_ocean_xy_tracer_diffusivity" /> 976 </field_group> 977 978 <field_group id="SPIN-UP_diaptr" > 979 <field field_ref="zomsfglo" name="zomsfglo" standard_name="meridional_streamfunction_global" grid_ref="gznl_W_3D" /> 980 <field field_ref="zotemglo" name="zotemglo" standard_name="zonal_mean_temperature_global" grid_ref="gznl_T_3D" /> 981 <field field_ref="zosrfglo" name="zosrfglo" standard_name="zonal_mean_surface_global" grid_ref="gznl_T_3D" /> 982 <field field_ref="zosalglo" name="zosalglo" standard_name="zonal_mean_salinity_global" grid_ref="gznl_T_3D" /> 983 <field field_ref="zomsfatl" name="zomsfatl" standard_name="meridional_streamfunction_atlantic" grid_ref="gznl_W_3D" /> 984 <field field_ref="zotematl" name="zotematl" standard_name="zonal_mean_temperature_atlantic" grid_ref="gznl_T_3D" /> 985 <field field_ref="zosrfatl" name="zosrfatl" standard_name="zonal_mean_surface_atlantic" grid_ref="gznl_T_3D" /> 986 <field field_ref="zosalatl" name="zosalatl" standard_name="zonal_mean_salinity_atlantic" grid_ref="gznl_T_3D" /> 987 <field field_ref="zomsfpac" name="zomsfpac" standard_name="meridional_streamfunction_pacific" grid_ref="gznl_W_3D" /> 988 <field field_ref="zotempac" name="zotempac" standard_name="zonal_mean_temperature_pacific" grid_ref="gznl_T_3D" /> 989 <field field_ref="zosrfpac" name="zosrfpac" standard_name="zonal_mean_surface_pacific" grid_ref="gznl_T_3D" /> 990 <field field_ref="zosalpac" name="zosalpac" standard_name="zonal_mean_salinity_pacific" grid_ref="gznl_T_3D" /> 991 <field field_ref="zomsfind" name="zomsfind" standard_name="meridional_streamfunction_indian" grid_ref="gznl_W_3D" /> 992 <field field_ref="zotemind" name="zotemind" standard_name="zonal_mean_temperature_indian" grid_ref="gznl_T_3D" /> 993 <field field_ref="zosrfind" name="zosrfind" standard_name="zonal_mean_surface_indian" grid_ref="gznl_T_3D" /> 994 <field field_ref="zosalind" name="zosalind" standard_name="zonal_mean_salinity_indian" grid_ref="gznl_T_3D" /> 995 <field field_ref="zomsfipc" name="zomsfipc" standard_name="meridional_streamfunction_indian_pacific" grid_ref="gznl_W_3D" /> 996 <field field_ref="zotemipc" name="zotemipc" standard_name="zonal_mean_temperature_indian_pacific" grid_ref="gznl_T_3D" /> 997 <field field_ref="zosrfipc" name="zosrfipc" standard_name="zonal_mean_surface_indian_pacific" grid_ref="gznl_T_3D" /> 998 <field field_ref="zosalipc" name="zosalipc" standard_name="zonal_mean_salinity_indian_pacific" grid_ref="gznl_T_3D" /> 999 <field field_ref="sophtadv" name="sophtadv" standard_name="advective_heat_transport" grid_ref="gznl_T_2D" /> 1000 <field field_ref="sopstadv" name="sopstadv" standard_name="advective_salt_transport" grid_ref="gznl_T_2D" /> 1001 <field field_ref="sophtldf" name="sophtldf" standard_name="diffusive_heat_transport" grid_ref="gznl_T_2D" /> 1002 <field field_ref="sopstldf" name="sopstldf" standard_name="diffusive_salt_transport" grid_ref="gznl_T_2D" /> 1003 </field_group> 1004 1005 </field_definition> -
branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/namelist_cfc_ref
r4147 r7075 7 7 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 8 8 ndate_beg = 300101 ! datedeb1 9 nyear_res = 1932 ! iannee1 9 nyear_res = 1600 ! iannee1 10 simu_type = 1 ! kind of Simulation: 1 = SPIN-UP (90y-cycle) 11 !! !! 2 = Hindcast/proj (100y cycle) 10 12 / 11 13 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' -
branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/namelist_idtra_ref
r6057 r7075 3 3 ! idealize Tracer namelist : NEMO idealize traceur model option and parameter input 4 4 ! ------------- 5 ! 5 ! 6 6 !>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> 7 7 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' … … 20 20 !! idealize tracer names 21 21 !!############################################### 22 !! names are defined in the top namelist (namtrc) 23 !! 22 !! names are defined in the top namelist (namtrc) 23 !! 24 24 !!############################################### 25 25 / … … 36 36 !!########################################################## 37 37 !! No aditional diagnostics associated to idealize tracers. 38 !! If one want to add additional diag, 39 !! can be done here, following the example just below 38 !! If one want to add additional diag, 39 !! can be done here, following the example just below 40 40 !!########################################################## 41 41 ! meddia2d(1) = 'INVTN' , 'Column N inventory' , 'mmolN/m2' -
branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/namelist_medusa_ref
r6057 r7075 10 10 ! 11 11 !! Primary production and chl related quantities 12 !! xxi : conversion factor from gC to mmolN 13 !! xaln : Chl-a specific initial slope of P-I curve for non-diatoms 12 !! xxi : conversion factor from gC to mmolN 13 !! xaln : Chl-a specific initial slope of P-I curve for non-diatoms 14 14 !! xald : Chl-a specific initial slope of P-I curve for diatoms 15 15 !! jphy : phytoplankton T-dependent growth switch 16 16 !! xvpn : maximum growth rate for non-diatoms 17 17 !! xvpd : maximum growth rate for diatoms 18 !! xthetam : maximum Chl to C ratio for non-diatoms 18 !! xthetam : maximum Chl to C ratio for non-diatoms 19 19 !! xthetamd : maximum Chl to C ratio for diatoms 20 20 !! … … 26 26 !! Nutrient limitation 27 27 !! jliebig : Liebig nutrient uptake switch 28 !! xnln : half-sat constant for DIN uptake by non-diatoms 29 !! xnld : half-sat constant for DIN uptake by diatoms 30 !! xsl : half-sat constant for Si uptake by diatoms 31 !! xfld : half-sat constant for Fe uptake by diatoms 32 !! xfln : half-sat constant for Fe uptake by non-datoms 28 !! xnln : half-sat constant for DIN uptake by non-diatoms 29 !! xnld : half-sat constant for DIN uptake by diatoms 30 !! xsl : half-sat constant for Si uptake by diatoms 31 !! xfld : half-sat constant for Fe uptake by diatoms 32 !! xfln : half-sat constant for Fe uptake by non-datoms 33 33 !! 34 34 !! Grazing 35 !! xgmi : microzoo maximum growth rate 36 !! xgme : mesozoo maximum growth rate 35 !! xgmi : microzoo maximum growth rate 36 !! xgme : mesozoo maximum growth rate 37 37 !! xkmi : microzoo grazing half-sat parameter 38 38 !! xkme : mesozoo grazing half-sat parameter … … 43 43 !! xpmipn : grazing preference of microzoo for non-diatoms 44 44 !! xpmid : grazing preference of microzoo for diatoms 45 !! xpmepn : grazing preference of mesozoo for non-diatoms 45 !! xpmepn : grazing preference of mesozoo for non-diatoms 46 46 !! xpmepd : grazing preference of mesozoo for diatoms 47 47 !! xpmezmi : grazing preference of mesozoo for microzoo 48 48 !! xpmed : grazing preference of mesozoo for detritus 49 !!50 !! Metabolic losses51 !! xmetapn : non-diatom metabolic loss rate52 !! xmetapd : diatom metabolic loss rate53 !! xmetazmi : microzoo metabolic loss rate54 !! xmetazme : mesozoo metabolic loss rate55 49 !! 56 50 !! Metabolic losses … … 77 71 !! jmd : detritus T-dependent remineralisation switch 78 72 !! jsfd : accelerate seafloor detritus remin. switch 79 !! xmd : detrital nitrogen remineralisation rate 80 !! xmdc : detrital carbon remineralisation rate 73 !! xmd : detrital nitrogen remineralisation rate 74 !! xmdc : detrital carbon remineralisation rate 81 75 !! 82 76 !! Stochiometric ratios … … 87 81 !! xthetad : detritus C:N ratio (FOR IMPLICIT DTC ONLY) 88 82 !! xrfn : phytoplankton Fe:N ratio 89 !! 83 !! xrsn : phytoplankton Si:N ratio (LEGACY; NOT USED) 90 84 !! 91 85 !! Iron parameters 92 86 !! jiron : iron scavenging submodel switch 93 87 !! xfe_mass : iron atomic mass 94 !! 95 !! 96 !! xLgT: total ligand concentration (umol/m3)97 !! xk_FeL: dissociation constant for (Fe + L)98 !! 99 !! 88 !! xfe_sol : aeolian iron solubility 89 !! xfe_sed : sediment iron input 90 !! xLgT : total ligand concentration (umol/m3) 91 !! xk_FeL : dissociation constant for (Fe + L) 92 !! xk_sc_Fe : scavenging rate of "free" iron 93 !! 100 94 !! Fast-sinking detritus parameters 101 95 !! jmartin : fast detritus remineralisation switch 102 96 !! jfdfate : fate of fast detritus at seafloor switch 103 97 !! jrratio : rain ratio switch 104 !! 105 !! 98 !! jocalccd : CCD switch 99 !! xridg_r0 : Ridgwell rain ratio coefficient 106 100 !! xfdfrac1 : fast-sinking fraction of diatom nat. mort. losses 107 101 !! xfdfrac2 : fast-sinking fraction of mesozooplankton mort. losses … … 121 115 !! jorgben : does organic detritus go to the benthos? 122 116 !! jinorgben : does inorganic detritus go to the benthos? 123 !! xsedn : organic nitrogen sediment remineralisation rate 124 !! xsedfe : organic iron sediment remineralisation rate 125 !! xsedsi : inorganic silicon sediment dissolution rate 126 !! xsedc : organic carbon sediment remineralisation rate 127 !! xsedca : inorganic carbon sediment dissolution rate 117 !! xsedn : organic nitrogen sediment remineralisation rate 118 !! xsedfe : organic iron sediment remineralisation rate 119 !! xsedsi : inorganic silicon sediment dissolution rate 120 !! xsedc : organic carbon sediment remineralisation rate 121 !! xsedca : inorganic carbon sediment dissolution rate 128 122 !! xburial : burial fraction of sediment material 129 123 !! … … 138 132 !! xsdiss : diatom frustule dissolution rate 139 133 !! 140 !! Gravitational sinking 141 !! vsed : detritus gravitational sinking rate 134 !! Gravitational sinking 135 !! vsed : detritus gravitational sinking rate 142 136 !! xhr : coeff for Martin's remineralisation profile 143 137 !! 144 138 !! Additional parameters 145 !! jpkb : vertical layer for diagnostic of the vertical flux 139 !! jpkb : vertical layer for diagnostic of the vertical flux 146 140 !! 147 141 !! UKESM1 - new diagnostics !! Jpalm 148 142 !! jdms : include dms diagnostics 149 !! 150 !! 143 !! jdms_input : use instant (0) or diel-avg (1) inputs 144 !! jdms_model : which DMS model is passed to atmosphere 145 !! 146 !! 151 147 &natbio 152 148 ! … … 155 151 xaln = 15.0 !! EKP (05/03/09) 156 152 xald = 11.25 !! EKP (05/03/09) 157 jphy = 1 !! 0 = T-independent; 1 = T-dependent 158 xvpn = 1.060 !! EKP (05/03/09)159 xvpd = 1.000 !! EKP (05/03/09)153 jphy = 1 !! 0 = T-independent; 1 = T-dependent; 2 = T-dependent-Q10 154 xvpn = 0.640 !! EKP (05/03/09) -- daily avg = 0.530; daily cycle = 1.060; Q10 = 0.64 155 xvpd = 0.600 !! EKP (05/03/09) -- daily avg = 0.500; daily cycle = 1.000; Q10 = 0.6 160 156 xthetam = 0.05 !! EKP (05/03/09) 161 157 xthetamd = 0.05 !! EKP (05/03/09) 158 jq10 = 1.50 !! Jpalm (17-06-2016) 162 159 !! 163 160 !! Diatom silicon parameters … … 185 182 !! xbetac = 0.69 !! Anderson & Pondaven (2003)for detrital carbon model 186 183 xkc = 0.80 !! Anderson & Pondaven (2003) 187 xpmipn = 0.75 !! 184 xpmipn = 0.75 !! 188 185 xpmid = 0.25 !! 189 186 xpmepn = 0.15 !! EKP (26/02/09) … … 193 190 !! 194 191 !! Metabolic losses 195 xmetapn = 0.02 !! 196 xmetapd = 0.02 !! 197 xmetazmi = 0.02 !! 198 xmetazme = 0.02 !! 192 xmetapn = 0.02 !! 193 xmetapd = 0.02 !! 194 xmetazmi = 0.02 !! 195 xmetazme = 0.02 !! 199 196 !! 200 197 !! Mortality losses … … 213 210 !! 214 211 !! Remineralisation 215 jmd = 1 !! 0 = T-independent; 1 = T-dependent212 jmd = 2 !! 0 = T-independent; 1 = T-dependent; 2 = T-dependent-Q10 216 213 jsfd = 0 !! 0 = unchanged seafloor remin.; 1 = accelerated seafloor remin. 217 xmd = 0.01 58 !! T-dependent; 0.05 at 18C (Yool et al., 2010)218 xmdc = 0.01 27 !! T-dependent; 0.04 at 18C (Yool et al., 2010)219 !! 214 xmd = 0.0190 !! T-dependent; 0.05 at 18C (Yool et al., 2010) - Q10 = 0.0190 215 xmdc = 0.0152 !! T-dependent; 0.04 at 18C (Yool et al., 2010) - Q10 = 0.0152 216 !! 220 217 !! Stochiometric ratios 221 218 xthetapn = 6.625 !! Redfield … … 234 231 xfe_sed = 0.000228 !! AXY (10/07/12): Moore-ish 235 232 xLgT = 1.0 !! from Diat-HadOCC; from Parekh et al. (2005) 236 xk_FeL 233 xk_FeL = 100.0 !! from Diat-HadOCC 237 234 xk_sc_Fe = 1.e-3 !! from Dutkiewicz et al. (2005) 238 235 !! … … 270 267 xsedca = 0.01 !! default ERSEM-ish value 271 268 xburial = 0.0 !! set to zero 272 !! 269 !! 273 270 !! River parameters 274 271 jriver_n = 0 !! 0 = no; 1 = runoff-dependent fluxes; 2= fixed fluxes … … 285 282 !! 286 283 !! Additional parameters 287 jpkb = 16 !! 284 jpkb = 16 !! 285 !! 286 !! UKESM1 - new diagnostics !! Jpalm 287 jdms = 1 !! include dms diagnostics 288 jdms_input = 1 !! use instant (0) or diel-avg (1) inputs 289 jdms_model = 3 !! choice of DMS model passed to atmosphere 290 !! 1 = ANDR, 2 = SIMO, 3 = ARAN, 4 = HALL 288 291 !! 289 292 / … … 358 361 &nammeddia 359 362 / 363 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 364 &nammedsbc ! parameters for inputs deposition 365 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 366 ! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask ! 367 ! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename ! 368 sn_dust = 'dust.orca' , -1 , 'dust' , .true. , .true. , 'yearly' , '' , '' , '' 369 ! 370 cn_dir = './' ! root directory for the location of the dynamical files 371 bdustfer = .true. ! boolean for dust input from the atmosphere 372 /
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