Changeset 7075 for branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/namelist_medusa_ref
- Timestamp:
- 2016-10-24T14:46:59+02:00 (8 years ago)
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- 1 edited
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branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/namelist_medusa_ref
r6057 r7075 10 10 ! 11 11 !! Primary production and chl related quantities 12 !! xxi : conversion factor from gC to mmolN 13 !! xaln : Chl-a specific initial slope of P-I curve for non-diatoms 12 !! xxi : conversion factor from gC to mmolN 13 !! xaln : Chl-a specific initial slope of P-I curve for non-diatoms 14 14 !! xald : Chl-a specific initial slope of P-I curve for diatoms 15 15 !! jphy : phytoplankton T-dependent growth switch 16 16 !! xvpn : maximum growth rate for non-diatoms 17 17 !! xvpd : maximum growth rate for diatoms 18 !! xthetam : maximum Chl to C ratio for non-diatoms 18 !! xthetam : maximum Chl to C ratio for non-diatoms 19 19 !! xthetamd : maximum Chl to C ratio for diatoms 20 20 !! … … 26 26 !! Nutrient limitation 27 27 !! jliebig : Liebig nutrient uptake switch 28 !! xnln : half-sat constant for DIN uptake by non-diatoms 29 !! xnld : half-sat constant for DIN uptake by diatoms 30 !! xsl : half-sat constant for Si uptake by diatoms 31 !! xfld : half-sat constant for Fe uptake by diatoms 32 !! xfln : half-sat constant for Fe uptake by non-datoms 28 !! xnln : half-sat constant for DIN uptake by non-diatoms 29 !! xnld : half-sat constant for DIN uptake by diatoms 30 !! xsl : half-sat constant for Si uptake by diatoms 31 !! xfld : half-sat constant for Fe uptake by diatoms 32 !! xfln : half-sat constant for Fe uptake by non-datoms 33 33 !! 34 34 !! Grazing 35 !! xgmi : microzoo maximum growth rate 36 !! xgme : mesozoo maximum growth rate 35 !! xgmi : microzoo maximum growth rate 36 !! xgme : mesozoo maximum growth rate 37 37 !! xkmi : microzoo grazing half-sat parameter 38 38 !! xkme : mesozoo grazing half-sat parameter … … 43 43 !! xpmipn : grazing preference of microzoo for non-diatoms 44 44 !! xpmid : grazing preference of microzoo for diatoms 45 !! xpmepn : grazing preference of mesozoo for non-diatoms 45 !! xpmepn : grazing preference of mesozoo for non-diatoms 46 46 !! xpmepd : grazing preference of mesozoo for diatoms 47 47 !! xpmezmi : grazing preference of mesozoo for microzoo 48 48 !! xpmed : grazing preference of mesozoo for detritus 49 !!50 !! Metabolic losses51 !! xmetapn : non-diatom metabolic loss rate52 !! xmetapd : diatom metabolic loss rate53 !! xmetazmi : microzoo metabolic loss rate54 !! xmetazme : mesozoo metabolic loss rate55 49 !! 56 50 !! Metabolic losses … … 77 71 !! jmd : detritus T-dependent remineralisation switch 78 72 !! jsfd : accelerate seafloor detritus remin. switch 79 !! xmd : detrital nitrogen remineralisation rate 80 !! xmdc : detrital carbon remineralisation rate 73 !! xmd : detrital nitrogen remineralisation rate 74 !! xmdc : detrital carbon remineralisation rate 81 75 !! 82 76 !! Stochiometric ratios … … 87 81 !! xthetad : detritus C:N ratio (FOR IMPLICIT DTC ONLY) 88 82 !! xrfn : phytoplankton Fe:N ratio 89 !! 83 !! xrsn : phytoplankton Si:N ratio (LEGACY; NOT USED) 90 84 !! 91 85 !! Iron parameters 92 86 !! jiron : iron scavenging submodel switch 93 87 !! xfe_mass : iron atomic mass 94 !! 95 !! 96 !! xLgT: total ligand concentration (umol/m3)97 !! xk_FeL: dissociation constant for (Fe + L)98 !! 99 !! 88 !! xfe_sol : aeolian iron solubility 89 !! xfe_sed : sediment iron input 90 !! xLgT : total ligand concentration (umol/m3) 91 !! xk_FeL : dissociation constant for (Fe + L) 92 !! xk_sc_Fe : scavenging rate of "free" iron 93 !! 100 94 !! Fast-sinking detritus parameters 101 95 !! jmartin : fast detritus remineralisation switch 102 96 !! jfdfate : fate of fast detritus at seafloor switch 103 97 !! jrratio : rain ratio switch 104 !! 105 !! 98 !! jocalccd : CCD switch 99 !! xridg_r0 : Ridgwell rain ratio coefficient 106 100 !! xfdfrac1 : fast-sinking fraction of diatom nat. mort. losses 107 101 !! xfdfrac2 : fast-sinking fraction of mesozooplankton mort. losses … … 121 115 !! jorgben : does organic detritus go to the benthos? 122 116 !! jinorgben : does inorganic detritus go to the benthos? 123 !! xsedn : organic nitrogen sediment remineralisation rate 124 !! xsedfe : organic iron sediment remineralisation rate 125 !! xsedsi : inorganic silicon sediment dissolution rate 126 !! xsedc : organic carbon sediment remineralisation rate 127 !! xsedca : inorganic carbon sediment dissolution rate 117 !! xsedn : organic nitrogen sediment remineralisation rate 118 !! xsedfe : organic iron sediment remineralisation rate 119 !! xsedsi : inorganic silicon sediment dissolution rate 120 !! xsedc : organic carbon sediment remineralisation rate 121 !! xsedca : inorganic carbon sediment dissolution rate 128 122 !! xburial : burial fraction of sediment material 129 123 !! … … 138 132 !! xsdiss : diatom frustule dissolution rate 139 133 !! 140 !! Gravitational sinking 141 !! vsed : detritus gravitational sinking rate 134 !! Gravitational sinking 135 !! vsed : detritus gravitational sinking rate 142 136 !! xhr : coeff for Martin's remineralisation profile 143 137 !! 144 138 !! Additional parameters 145 !! jpkb : vertical layer for diagnostic of the vertical flux 139 !! jpkb : vertical layer for diagnostic of the vertical flux 146 140 !! 147 141 !! UKESM1 - new diagnostics !! Jpalm 148 142 !! jdms : include dms diagnostics 149 !! 150 !! 143 !! jdms_input : use instant (0) or diel-avg (1) inputs 144 !! jdms_model : which DMS model is passed to atmosphere 145 !! 146 !! 151 147 &natbio 152 148 ! … … 155 151 xaln = 15.0 !! EKP (05/03/09) 156 152 xald = 11.25 !! EKP (05/03/09) 157 jphy = 1 !! 0 = T-independent; 1 = T-dependent 158 xvpn = 1.060 !! EKP (05/03/09)159 xvpd = 1.000 !! EKP (05/03/09)153 jphy = 1 !! 0 = T-independent; 1 = T-dependent; 2 = T-dependent-Q10 154 xvpn = 0.640 !! EKP (05/03/09) -- daily avg = 0.530; daily cycle = 1.060; Q10 = 0.64 155 xvpd = 0.600 !! EKP (05/03/09) -- daily avg = 0.500; daily cycle = 1.000; Q10 = 0.6 160 156 xthetam = 0.05 !! EKP (05/03/09) 161 157 xthetamd = 0.05 !! EKP (05/03/09) 158 jq10 = 1.50 !! Jpalm (17-06-2016) 162 159 !! 163 160 !! Diatom silicon parameters … … 185 182 !! xbetac = 0.69 !! Anderson & Pondaven (2003)for detrital carbon model 186 183 xkc = 0.80 !! Anderson & Pondaven (2003) 187 xpmipn = 0.75 !! 184 xpmipn = 0.75 !! 188 185 xpmid = 0.25 !! 189 186 xpmepn = 0.15 !! EKP (26/02/09) … … 193 190 !! 194 191 !! Metabolic losses 195 xmetapn = 0.02 !! 196 xmetapd = 0.02 !! 197 xmetazmi = 0.02 !! 198 xmetazme = 0.02 !! 192 xmetapn = 0.02 !! 193 xmetapd = 0.02 !! 194 xmetazmi = 0.02 !! 195 xmetazme = 0.02 !! 199 196 !! 200 197 !! Mortality losses … … 213 210 !! 214 211 !! Remineralisation 215 jmd = 1 !! 0 = T-independent; 1 = T-dependent212 jmd = 2 !! 0 = T-independent; 1 = T-dependent; 2 = T-dependent-Q10 216 213 jsfd = 0 !! 0 = unchanged seafloor remin.; 1 = accelerated seafloor remin. 217 xmd = 0.01 58 !! T-dependent; 0.05 at 18C (Yool et al., 2010)218 xmdc = 0.01 27 !! T-dependent; 0.04 at 18C (Yool et al., 2010)219 !! 214 xmd = 0.0190 !! T-dependent; 0.05 at 18C (Yool et al., 2010) - Q10 = 0.0190 215 xmdc = 0.0152 !! T-dependent; 0.04 at 18C (Yool et al., 2010) - Q10 = 0.0152 216 !! 220 217 !! Stochiometric ratios 221 218 xthetapn = 6.625 !! Redfield … … 234 231 xfe_sed = 0.000228 !! AXY (10/07/12): Moore-ish 235 232 xLgT = 1.0 !! from Diat-HadOCC; from Parekh et al. (2005) 236 xk_FeL 233 xk_FeL = 100.0 !! from Diat-HadOCC 237 234 xk_sc_Fe = 1.e-3 !! from Dutkiewicz et al. (2005) 238 235 !! … … 270 267 xsedca = 0.01 !! default ERSEM-ish value 271 268 xburial = 0.0 !! set to zero 272 !! 269 !! 273 270 !! River parameters 274 271 jriver_n = 0 !! 0 = no; 1 = runoff-dependent fluxes; 2= fixed fluxes … … 285 282 !! 286 283 !! Additional parameters 287 jpkb = 16 !! 284 jpkb = 16 !! 285 !! 286 !! UKESM1 - new diagnostics !! Jpalm 287 jdms = 1 !! include dms diagnostics 288 jdms_input = 1 !! use instant (0) or diel-avg (1) inputs 289 jdms_model = 3 !! choice of DMS model passed to atmosphere 290 !! 1 = ANDR, 2 = SIMO, 3 = ARAN, 4 = HALL 288 291 !! 289 292 / … … 358 361 &nammeddia 359 362 / 363 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 364 &nammedsbc ! parameters for inputs deposition 365 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 366 ! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask ! 367 ! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename ! 368 sn_dust = 'dust.orca' , -1 , 'dust' , .true. , .true. , 'yearly' , '' , '' , '' 369 ! 370 cn_dir = './' ! root directory for the location of the dynamical files 371 bdustfer = .true. ! boolean for dust input from the atmosphere 372 /
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