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2016-04-18:

15:21 Changeset [6481] by mocavero

Create a branch to test a second level of parallelism on v3_6_STABLE for the GYRE configuration

14:20 Ticket #1634 (wrong diagnostic of the mixed layer depth) closed by flavoni
fixed
12:02 Ticket #1714 (bugs in icbrst.F90) closed by davestorkey
invalid: Invalid ticket: 1. The icbrst.F90 changes went into the trunk, not into …
11:53 Changeset [6480] by davestorkey

Bug fixes for icbrst.F90 in UKMO/icebergs_restart_single_file_corrected branch.

11:44 user/clem/Heat_Flux_air-ice-ocean_interface edited by aurore.voldoire
(diff)
11:39 Changeset [6479] by davestorkey

Create copy of UKMO/icebergs_restart_single_file branch to correct bug. (Need to create a new branch because original branch was upgraded to the trunk prior to merging back).

10:41 Ticket #1714 (bugs in icbrst.F90) created by davestorkey
There are a couple of syntax errors that I introduced when I modified …
09:41 user/clem/Heat_Flux_air-ice-ocean_interface edited by aurore.voldoire
(diff)

2016-04-15:

18:44 Ticket #1539 (Performance optimizations on NEMO 3.6 limhdf routine) closed by mcastril
fixed
18:43 Changeset [6478] by mcastril

Merging of branch dev_r5546_CNRS19_HPC_scalability #1539

17:33 user/clem/Heat_Flux_air-ice-ocean_interface edited by clem
(diff)
17:17 user/clem/Heat_Flux_air-ice-ocean_interface edited by clem
(diff)
17:04 user/clem/Heat_Flux_air-ice-ocean_interface edited by clem
(diff)
16:31 user/clem/Heat_Flux_air-ice-ocean_interface edited by omamce
(diff)
15:30 Changeset [6477] by mcastril

#1539 fix for last merge

14:50 Changeset [6476] by mcastril

Merging of branch dev_r5546_CNRS19_HPC_scalability #1539

14:23 user/clem/Heat_Flux_air-ice-ocean_interface edited by matthieu.chevallier
(diff)
12:25 user/clem/Heat_Flux_air-ice-ocean_interface created by clem

2016-04-14:

23:40 New reply on Tools created by luc
[SIREN] Grid coincidence
17:00 Changeset [6475] by drew

UKMO NEMO Ticket#609. Change ctl_stop to ctl_warn on check for trend diagnostics with VVL.

16:33 Changeset [6474] by drew

Commit SVN cleanout.

16:26 Changeset [6473] by drew

UKMO NEMO Ticket #609. Branch required to eliminate check on using trend diagnostics with VVL. I want these even if they are slightly in error.

14:38 Ticket #1713 (Bugs in split explicit diffusion) created by jchanut
= Description = Few users may be concerned since implicit diffusion is the …
09:56 New reply on Tools created by jpaul
[SIREN] Periodicity
09:51 New reply on Tools created by jpaul
[SIREN] Grid coincidence

2016-04-13:

19:53 New topic on Tools created by luc
[SIREN] Grid coincidence
19:40 New reply on Tools created by luc
[SIREN] Periodicity
18:14 New reply on Tools created by jpaul
[SIREN] Periodicity
17:59 New reply on Tools created by jpaul
[SIREN] 'create_bathymetry' segmentation fault
17:46 Ticket #1650 (temperature and salinity trends due to river runoff) closed by lovato
fixed: The proposed solution was implemented, but the runoff term was introduced …
17:41 Changeset [6472] by lovato

Include output of runoff term on SST and SSS in TRA/trasbc.F90 (#1650)

17:41 Changeset [6471] by lovato

Include output of runoff term on SST and SSS in TRA/trasbc.F90 (#1650)

17:41 Changeset [6470] by clem

solve issue #1712

17:15 Ticket #1712 (LIM3: salt leaks if ice salinity is kept constant) closed by clem
fixed: solved at r6469
17:15 Changeset [6469] by clem

solve issue #1712

16:28 New topic on Tools created by luc
[SIREN] Periodicity
13:20 Special Rates for NEMO Users.pdf attached to Users/Agenda/2016-06-22 by diovino
13:19 Users/Agenda/2016-06-22 edited by diovino
(diff)
11:16 New reply on Tools created by luc
[SIREN] 'create_bathymetry' segmentation fault
10:09 Users/Agenda/2016-06-22 edited by msi
(diff)
10:09 Users/Agenda/2016-06-22 edited by msi
(diff)
10:08 Users/Agenda/2016-06-22 edited by msi
(diff)
09:27 New topic on Tools created by luc
[SIREN] 'create_bathymetry' segmentation fault

2016-04-12:

18:36 Ticket #1712 (LIM3: salt leaks if ice salinity is kept constant) created by clem
= Description = There is a salt leak in LIM3 when ice salinity is kept …
11:06 Changeset [6468] by jpaul

cosmetic changes

10:50 Ticket #1711 (commit changes/bugfix/... for SIREN) closed by jpaul
fixed
10:47 Changeset [6467] by jpaul

see ticket #1711

10:46 Ticket #1711 (commit changes/bugfix/... for SIREN) created by jpaul
cosmetic change: move doc creation

2016-04-11:

17:54 Changeset [6466] by jpalmier

JPALM — 11-04-2016 — add dust deposition input through namelist

— relax time to IDTRA surface flux

16:09 Changeset [6465] by kingr

Reverted removal of dobsini and dobsend from namelist_ref; resolved problem with these being predefined in the obsoper.

13:09 Changeset [6464] by pabouttier

Add restarting functionality for stochastic parametrization parameters; See ticket #1705

2016-04-08:

18:11 Changeset [6463] by dancopsey

Merged in diaptr changes from v3_6_extra_CMIP6_diagnostics up to revision 6433.

18:08 Changeset [6462] by dancopsey

Clear out SVN keywords.

18:06 Changeset [6461] by dancopsey

Second attempt to make a GC3.0 package.

18:06 Ticket #1703 (Wrong runoff fields time swap in coupled mode (ln_cpl)) closed by lovato
fixed: I actually revised the proposed solution and It would be necessary only …
18:03 Ticket #1655 (SETTE test fails if your installation path contains "SETTE" keyword) closed by lovato
fixed: The path to MAIN_DIR was modified as follow […] and changes were …
18:00 Changeset [6460] by lovato

Move runoff fields time swap in sbcmod (#1703) and change SETTE path definition of MAIN_DIR (#1655)

18:00 Changeset [6459] by lovato

Move runoff fields time swap in sbcmod (#1703) and change SETTE path definition of MAIN_DIR (#1655)

16:31 Changeset [6458] by dancopsey

Mame eos_fzp be called as a subroutine instead of a function to be compatible with changes in nemo_v3_6_STABLE_copy revision 6436

15:48 Ticket #1710 (Instability in results due to new compilation environment) created by nicolasmartin
= Description = To resolve a crash issue on AMM12 configuration tested …
11:26 Changeset [6457] by dancopsey

Merged in changeset 6238 of dev_r5021_nn_etau_revision

10:59 Changeset [6456] by aumont

addition of a README

10:57 Changeset [6455] by aumont

upgrade to last revision of 3_6_stable

10:49 Changeset [6454] by timgraham

Added in modifications to updateTS as made in Grenoble

10:10 Changeset [6453] by aumont

New developments of PISCES (QUOTA, ligands, lability, …)

09:45 Changeset [6452] by aumont

Renamed the branch

09:43 Changeset [6451] by aumont

New developments of PISCES (QUOTA, Lability, Iron ligands, …)

2016-04-07:

18:58 Users/Agenda/2016-06-22 edited by anaguiar
(diff)
18:23 Changeset [6450] by dancopsey

Merged in changeset 5242 of dev_r5021_nn_etau_revision

18:22 Changeset [6449] by davestorkey

Bug fix for bug fix in TOOLS/REBUILD_NEMO/icb_combrest.py for 3.6 branch.
See ticket #1708.

18:21 Changeset [6448] by dancopsey

Merged in changeset 5239 of dev_r5021_nn_etau_revision

18:19 Changeset [6447] by davestorkey

Bug fix for bug fix to TOOLS/REBUILD_NEMO/icb_combrest.py
See ticket #1708.

17:47 Changeset [6446] by timgraham

Fixed version of fortran.c and changes in limrhg.F90 so now compiles without errors

17:37 Changeset [6445] by timgraham

Corrections to agrif_opa_interp missed when merging with trunk

17:28 Changeset [6444] by dancopsey

Merged in r5535 through r6335 of dev_r5107_mld_zint

17:24 Changeset [6443] by dancopsey

Merged in r5248 through r5249 of dev_r5107_mld_zint

16:38 Changeset [6442] by dancopsey

Merged in v3_6_extra_CMIP6_diagnostics up to revision 6433.

16:33 Changeset [6441] by dancopsey

Adding one missing file which failed at the last commit.

16:32 Changeset [6440] by dancopsey

Merged in nemo_v3_6_STABLE_copy up to revision 6436.

16:21 Changeset [6439] by dancopsey

Stripped out SVN keywords.

16:16 Changeset [6438] by dancopsey

Make a GC3.0 package branch.

15:57 Changeset [6437] by timgraham

Dynamic SSH put in diaar5 instead as didn't work doing it with XIOS alone. Updated field_def to match
Removed iom_put call for bn2 from zdftmx (as it's now in diawri and can therefore be used with both the old and new tidal mixing schemes)

15:33 Changeset [6436] by timgraham

Updated to r6424 of nemo_v3_6_STABLE

15:21 Developers/Dev Process edited by nicolasmartin
(diff)
14:19 fig02.png attached to 2016WP/Noc Wad by acc
maths fig 2
14:09 2016WP/Noc Wad edited by acc
(diff)
14:02 fig05.png attached to 2016WP/Noc Wad by acc
13:43 2016WP/Noc Wad edited by acc
(diff)
13:41 2016WP/Noc Wad edited by acc
(diff)
13:16 2016WP/Noc Wad edited by acc
(diff)
12:56 fig17.png attached to 2016WP/Noc Wad by acc
12:56 fig16.png attached to 2016WP/Noc Wad by acc
12:56 fig15.png attached to 2016WP/Noc Wad by acc
12:55 fig14.png attached to 2016WP/Noc Wad by acc
12:55 fig13.png attached to 2016WP/Noc Wad by acc
12:54 fig12.png attached to 2016WP/Noc Wad by acc
12:54 fig11.png attached to 2016WP/Noc Wad by acc
12:54 fig10.png attached to 2016WP/Noc Wad by acc
12:54 fig09.png attached to 2016WP/Noc Wad by acc
12:53 fig08.png attached to 2016WP/Noc Wad by acc
12:53 fig07.png attached to 2016WP/Noc Wad by acc
12:53 fig06.png attached to 2016WP/Noc Wad by acc
12:53 fig04.png attached to 2016WP/Noc Wad by acc
12:52 fig03.png attached to 2016WP/Noc Wad by acc
12:50 2016WP/Noc Wad edited by acc
(diff)
12:44 Changeset [6435] by timgraham

Added squared buoyancy frequency (extra iom_put call and field in field_def).
Added dynamic SSH (done in field_def using XIOS - relies on key_diaar5).

12:42 fig01.png attached to 2016WP/Noc Wad by acc
maths fig 1
12:41 2016WP/Noc Wad edited by acc
(diff)
12:29 Developers/Dev Process edited by nicolasmartin
(diff)
12:28 Developers/Dev Process edited by nicolasmartin
(diff)
11:18 Developers/Dev Process edited by nicolasmartin
(diff)
11:13 2016WP/AGRIF-2_Rousset-Levy edited by clevy
(diff)
11:06 2016WP/AGRIF-2_Rousset-Levy created by clevy

2016-04-06:

19:35 Developers/Dev Process edited by nicolasmartin
(diff)
19:33 Developers/Developing Code Changes edited by clevy
(diff)
18:09 Developers/SVN_Quick Reference edited by clevy
(diff)
17:51 Changeset [6434] by flavoni

update usr_def module: add explicit inputs and outputs arguments, see ticket 1692

17:02 Developers/Developing Code Changes edited by clevy
(diff)
16:45 Users/Agenda/2016-06-22 edited by diovino
(diff)
15:17 Developers/Developing Code Changes edited by clevy
(diff)
15:09 2016WP/2016Shared Actions edited by clevy
(diff)
14:54 Changeset [6433] by timgraham

Modified method as suggested by Christian. adv and ldf transports by basin now work correctly.

13:09 Ticket #1709 (WP2016: Shared action AGRIF-2: AGRIF LIM3) created by clevy
= Description = Develop functionality to use AGRIF with LIM3. = Analysis …
12:23 Developers/Developing Code Changes edited by clevy
(diff)
11:40 2016WP/ROBUST-10_MARTIN edited by acc
(diff)
09:51 Changeset [6432] by timgraham

More bug fixes. Now compiles and passes SETTE tests

09:50 Users/Agenda/2016-06-22 edited by flavoni
(diff)

2016-04-05:

17:48 Changeset [6431] by timgraham

Bug fixes in diaptr

17:25 Changeset [6430] by timgraham

Added new variables to field_def file

17:10 Changeset [6429] by timgraham

Extra change forgotten in previous commit

16:48 Changeset [6428] by timgraham

Added advective and diffusive heat transport by basin to diaptr module

16:27 Users/Agenda/2016-06-22 edited by cbricaud
(diff)
16:26 Users/Agenda/2016-06-22 edited by cbricaud
(diff)
16:25 Users/Agenda/2016-06-22 edited by cbricaud
(diff)
14:55 Changeset [6427] by timgraham

Cleared svn keywords

14:52 Changeset [6426] by timgraham

Branch of v3_6_STABLE to add missing CMIP6 diagnostics

11:36 Changeset [6425] by timgraham

Remove leftover ">>>>>working" line accidentally left from merge.

10:24 Ticket #1708 (bug in icb_combrest.py) closed by davestorkey
fixed: I have updated icb_combrest.py in the trunk at revision 6423 after review …
10:21 Changeset [6424] by davestorkey
  1. Add icb_combrest.py (for iceberg restart rebuilding) to nemo_v3_6_STABLE branch.
  2. Add nonzero sys.exit code for icb_pp.py in nemo_v3_6_STABLE branch.

See ticket #1708

10:12 Changeset [6423] by davestorkey
  1. Bug fix for icb_combrest.py. Will now cope with a set of iceberg restart files with icebergs on the zeroth processor.
  2. Add nonzero sys.exit codes for icb_combrest.py and icb_pp.py.

See ticket #1708

2016-04-04:

16:50 Users/Agenda/2016-06-22 edited by diovino
(diff)
15:11 Ticket #1708 (bug in icb_combrest.py) created by davestorkey
The python script to complete the rebuilding of iceberg restarts (after …
12:44 Changeset [6422] by flavoni

first attempt: introduction of usr_def module for horizontal domain GYRE exemple, see ticket #1692

12:13 Ticket #1707 (bug on bottom boundary condition in PISCES model) closed by cetlod
fixed: Done in 3.6 stable, see changeset:6420 Done in trunk, see …
12:12 Changeset [6421] by cetlod

trunk : bugfix in PISCES bottom boundary condition, see ticket #1707

12:10 Changeset [6420] by cetlod

3.6 stable : bugfix in PISCES bottom boundary condition, see ticket #1707

12:08 Ticket #1707 (bug on bottom boundary condition in PISCES model) created by cetlod
= Description = For calcite, burial efficiency is made a function of …
11:16 Users/Agenda/2016-06-22 edited by mocavero
(diff)
11:14 Users/Agenda/2016-06-22 edited by diovino
(diff)
10:47 Users/Agenda/2016-06-22 edited by diovino
(diff)
10:12 Users/Agenda/2016-06-22 edited by sciliberti
(diff)
10:11 Users/Agenda/2016-06-22 edited by sciliberti
(diff)
10:06 Users/Agenda/2016-06-22 edited by diovino
(diff)
09:42 Users/Agenda/2016-06-22 edited by diovino
(diff)

2016-04-01:

17:47 Changeset [6419] by jenniewaters

Revert the changes to &namobs in namelist_ref to avoid conflicts in the G06 build.

16:09 Changeset [6418] by clem

add ice output for salt flux from sublimation

16:08 Changeset [6417] by clem

add ice output for salt flux from sublimation

14:22 Changeset [6416] by clem

phase trunk with new additions on LIM3 from 3.6 stable (r6398 r6399 and r6400)

11:32 Ticket #1706 (iiceconc is defined in field_def.xml, but no iom_put) created by omamce
= Description = iiceconc (with double beginning i) is defined in …
10:16 Ticket #1699 (Wrong name of vertical scale factor in diawri.F90) closed by lovato
fixed: The bug was corrected in the trunk at r6387 (2016-03-14) by cetlod. This …
10:11 Ticket #1460 (exit code for rebuild_nemo) closed by lovato
fixed: The rebuild_nemo tool was updated to include the error exit code 9 when …
10:06 Changeset [6415] by lovato

Update rebuild_nemo: include error exit code 9 (#1460) and zero fill of output arrays (#948)

10:06 Changeset [6414] by lovato

Update rebuild_nemo: include error exit code 9 (#1460) and zero fill of output arrays (#948)

2016-03-31:

18:30 Ticket #1704 (NEMO reproducibility fails with land domains exclusion) closed by lovato
fixed: The proposed solution to fix the reproducibility bug was implemented in …
18:22 Changeset [6413] by lovato

Revise domain decomposition with land PEs exclusion (see ticket #1704)

18:22 Changeset [6412] by lovato

Revise domain decomposition with land PEs exclusion (see ticket #1704)

16:19 Changeset [6411] by jenniewaters

White space change to avoid conflicts.

12:20 Changeset [6410] by flavoni

Create a specific branch simplification of configuration interface

11:49 2016WP/Simplif2-CNRS-simona edited by flavoni
(diff)

2016-03-30:

17:10 Changeset [6409] by lovato

Update CMCC DOC logo, SETTE scripts and arch files.

17:09 Changeset [6408] by lovato

Update CMCC DOC logo, SETTE scripts and arch files.

14:23 Changeset [6407] by jenniewaters

Replace removed white space to avoid conflicts with other branches.

13:21 Changeset [6406] by jenniewaters

Manually merged in the efficiency changes for the obsoper from http://fcm3/projects/NEMO.xm/browser/branches/2015/dev_r5776_UKMO2_OBS_efficiency_improvs.

2016-03-29:

13:57 Ticket #1705 (Missing restarting functionality for stochastic parametrization parameters) closed by pabouttier
fixed: Fixed in the revision 6405.
13:54 Changeset [6405] by pabouttier

Add restarting functionality for stochastic parametrization parameters; See ticket #1705

13:53 Ticket #1705 (Missing restarting functionality for stochastic parametrization parameters) created by pabouttier
Currently, there is no way to restart a run with the same stochastic …
11:24 Changeset [6404] by timgraham

First attempt at upgrading branch to the head of the trunk. This should include all of the simplification branch from the merge in Dec 2015.

2016-03-25:

18:31 2016WP/HPC-4_Silvia Mocavero created by mocavero
17:24 Changeset [6403] by cetlod

trunk:new developments already included in 3.6 stable, see points 1, 2 and 4 of ticket #1678

17:00 2016WP/HPC-1_Silvia Mocavero created by mocavero
12:49 2016WP/2016Shared Actions edited by mocavero
(diff)
12:48 2016WP/CMCC_2016 edited by mocavero
(diff)

2016-03-24:

16:32 Changeset [6402] by rfurner

small namelist change

13:22 2016WP/WAVE-3_Juan Castillo edited by jcastill
(diff)
12:08 Ticket #1475 (Missmatch in bdyini between sending and receiving) closed by mocavero
invalid
10:57 Changeset [6401] by timgraham

Reinstate svn keywords before update to head of trunk

2016-03-23:

18:18 ticket/1704 created by lovato
18:06 Ticket #1704 (NEMO reproducibility fails with land domains exclusion) created by lovato
When running SETTE with the default settings all tests of NEOM 3.6 are …
17:15 2016WP/WAVE-3_Juan Castillo created by timgraham
17:04 Ticket #1703 (Wrong runoff fields time swap in coupled mode (ln_cpl)) created by lovato
The swap of runoff fields between now and before timesteps is done at the …
14:58 Ticket #1619 (Branch to provide coupling with WaveWatchIII) reopened by jcastill
14:55 Ticket #1586 (Adding warm layer and cool skin models to NEMO) closed by timgraham
fixed
11:37 ticket/2016WP/HPC-3_Tim Graham created by timgraham
11:32 Ticket #1702 (HPC-3(2016WP) - suppression of useless communications) created by timgraham
= Description = Suppress unnecessary lbc_lnk calls in all parts of NEMO. …

2016-03-22:

18:34 Ticket #1695 (LIM3: ice thickness out of bounds at high resolution) closed by clem
fixed: solved at r6398
18:31 Ticket #1697 (ice-air coupling (LIM3). part2: sublimation) closed by clem
fixed: solved at r6399
18:31 Ticket #1696 (ice-air coupling (LIM3). part1: snow blown by the winds) closed by clem
fixed
18:30 Ticket #1694 (LIM3 bug: wrong value of fresh water budget sent to passive tracers ...) closed by clem
fixed: solved at r6399
18:27 Changeset [6400] by clem

following previous commits on LIM3 (r6399), this commit makes lim3 more accurately conservative.ÃÃ

18:17 Changeset [6399] by clem

solve issues for 1)wrong fresh water budget sent to passive tracers and 2)ice-air coupling. See tickets #1694 #1696 #1697 and #1698

18:14 Changeset [6398] by clem

solve issue for out of bounds ice thicknesses. see ticket #1695

12:56 Users/Agenda/2016-06-22 edited by timgraham
(diff)
11:25 2016WP/Noc Wad created by acc
11:12 Changeset [6397] by acc

#1701. Create new branch for the 2016 bugfixes to Wetting amd Drying

11:06 Ticket #1701 (New development branch for 2016 fixes to Wetting and Drying) created by acc
= Description = New development branch for 2016 fixes to Wetting and …
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