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2017-01-25:

19:12 Ticket #1835 (Uninitialized variable nn_dttrc used in iom.F90) created by mdunphy
= Context = The variable nn_dttrc is not initialized when we run without …
17:43 Changeset [7609] by acc

Branch 2016/dev_merge_2016. Additional WAD test case with a sinusoidally forced open boundary. Changes include additions to usrdef routines (WAD_TEST_CASES/MYSRC), configuration namelist and documentation only

17:30 Changeset [7608] by kingr

Create a branch to test limiting the min temp in CO6/AMM7

16:37 Changeset [7607] by cetlod

v3.6 stable : add missing features for CMIP6 exercise, see ticket #1834

14:40 Glossary edited by nemo
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14:07 Ticket #1834 (Missing features in 3.6 stable) created by cetlod
Some features are missing in the 3.6 stable and are needed for CMIP6 …
13:01 Changeset [7606] by jcastill

Fix some bugs introduced due to particularities of the branch revision; make some small improvements

12:14 New topic on Forks created by nemo
[FAQ] Test cases
12:13 New topic on Skilled created by nemo
[FAQ] Choosing options (natural and computer science), please read this before creating a new topic
12:05 New topic on Beginner created by nemo
[FAQ] Getting started with NEMO, please read this before creating a new topic
11:59 New forum News created by nemo
Main events on ocean modelling - Conferences, open meetings, papers calls, workshops, …
11:57 New forum Forks created by nemo
Alternative configurations, repositories and utilities - Unsupported configurations, unofficial repositories, other available utilities, …
11:55 New forum Skilled created by nemo
Natural & computer science - Additional answers on choosing savvy options
11:47 New forum Beginner created by nemo
Getting started with the ocean model - Download, install, compile and run reference configurations
11:29 Changeset [7605] by timgraham

Added field for dynldf_c3d case

11:28 New topic on Tools created by nemo
[FAQ] Tools and Interfaces, please read this before creating a new topic
06:56 Ticket #1833 (Uninitialized arrays bfrua/bfrva in zdf_bfr_init) created by mdunphy
= Context = The function zdf_bfr_init does not initialize arrays …

2017-01-24:

16:50 Changeset [7604] by dkuts

fixed some typos

16:26 Changeset [7603] by flavoni

update wrong names for pisces outputs

13:43 Changeset [7602] by frrh

Typo fix

13:39 Changeset [7601] by frrh

#1821 more changes to replace pointers with ALLOCATE in traldf_iso

2017-01-23:

19:26 Changeset [7600] by jcastill

Changes as in branches/2016/dev_merge_2016@7562 (branches/2016/dev_INGV_UKMO_2016@7558)

16:12 Changeset [7599] by timgraham

Fully working version

14:13 Changeset [7598] by acc

Branch 2016/dev_merge_2016. Update Wetting and drying documentation (temporary location)

2017-01-20:

20:06 Glossary edited by nicolasmartin
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19:55 Glossary edited by nicolasmartin
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19:43 Glossary edited by nicolasmartin
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19:40 Changeset [7597] by clem

add the possibility to run without sea ice diffusion (by default)

18:56 Glossary edited by nicolasmartin
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18:50 Changeset [7596] by clem

change namelist parameters names

18:43 Glossary edited by nicolasmartin
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18:29 Changeset [7595] by clem

correct xml files for scalar outputs

18:28 Changeset [7594] by clem

correct xml for scalar outputs

17:32 Changeset [7593] by hadjt

Added xios output for DIA/diadct.F90 NOOS 25hr mean output (not touched hourly mean).
Added namelist switched for DIA/diaregmean.F90 to control output of PEA, MLD, and SBC variables

17:08 Changeset [7592] by kingr

Adding new files missed in previous commit.

16:53 Changeset [7591] by kingr

Addedd Kara ML code to avoid conflicts with branches/UKMO/CO6_KD490_amm7_oper

16:51 Changeset [7590] by kingr

Added diagnostics from operational version: Kara ML, diaopfoam, diurnal.

16:26 Changeset [7589] by timgraham

Another bug

16:24 Changeset [7588] by acc

Branch dev_merge_2016. Wetting and drying enhancements. Added the reading of bathymetry with land elevations (negative depths) from domain configuration files (if ln_wd is .true.). Also added better detection of convergence in the limiter iterations (wet_dry.F90)

16:17 Changeset [7587] by acc

Branch dev_merge_2016. Added the writing and reading of attributes to the domain configuration (cfg_write and cfg_read in domain.F90). As an example, the domain configuration files now include the cn_cfg and nn_cfg values as attributes

16:15 Changeset [7586] by timgraham

More bug fixes

16:06 Changeset [7585] by timgraham

Bug fix

15:43 Ticket #1831 (Adding the ability to read character attributes using iom_getatt) closed by acc
fixed: Changes made and tested at Changeset [7584]
15:42 Changeset [7584] by acc

Branch dev_merge_2016. Added iom_putatt routine to enable writing of netcdf attributes to domain configuration files. See ticket #1831

15:39 Ticket #1831 (Adding the ability to read character attributes using iom_getatt) reopened by acc
Reopened ticket in order to add iom_putatt routine which will enable the …
14:59 Changeset [7583] by timgraham

Correction to background vertical diffusivity to account for spacial variation

14:53 Changeset [7582] by timgraham

Added code to allow output of some diagnostics which are constant in Met Office CMIP6 models
Changes described in UKESM ticket 324 (https://code.metoffice.gov.uk/trac/UKESM/ticket/324)

11:49 Ticket #1832 (TKE source for vertical mixing must be reduced under the sea-ice (TKE ...) created by ctlod
= Context = 2 options in zdftke.F90 module are concerned: - TKE due …

2017-01-19:

19:54 Users edited by nicolasmartin
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19:27 Tag change on System Team by nicolasmartin
Tags ST added
18:33 Tag change on Ticket Guidelines/Modify Ticket Summary by nicolasmartin
Tags help added
18:32 Ticket Guidelines/Modify Ticket Summary edited by nicolasmartin
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18:15 Users edited by nicolasmartin
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18:01 Users edited by nicolasmartin
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17:59 Users edited by nicolasmartin
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17:48 Users/Model Install created by nicolasmartin
17:48 Tag change on Users/Model Install by nicolasmartin
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17:40 Users edited by nicolasmartin
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17:38 Users/Model Interfacing/Biogeochemistry Coarsening created by nicolasmartin
17:38 Tag change on Users/Model Interfacing/Biogeochemistry Coarsening by nicolasmartin
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17:36 Users/Model Interfacing/Data Assimilation created by nicolasmartin
17:36 Tag change on Users/Model Interfacing/Data Assimilation by nicolasmartin
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17:35 Users/Model Interfacing/Coupling created by nicolasmartin
17:35 Tag change on Users/Model Interfacing/Coupling by nicolasmartin
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17:34 Users/Model Interfacing/Inputs Outputs created by nicolasmartin
17:34 Tag change on Users/Model Interfacing/Inputs Outputs by nicolasmartin
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17:32 Users/Model Interfacing created by nicolasmartin
17:32 Tag change on Users/Model Interfacing by nicolasmartin
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17:23 Users/Setup New Configuration created by nicolasmartin
17:23 Tag change on Users/Setup New Configuration by nicolasmartin
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17:22 Users/Reference Configurations created by nicolasmartin
17:22 Tag change on Users/Reference Configurations by nicolasmartin
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17:00 2017WP/Shared Actions edited by nicolasmartin
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13:20 Changeset [7581] by frrh

#1821. Commit optimisations to replace pointers with allocatable
work arrays. This is based on MG's initial work, but I've added
traadv_tvd.F90 since this will be applicable more generally to NEMO
whilst traadv_muscl.F90 only applies if MEDUSA is active.
I've not bothered with fldread.F90 since this is only called a
handful of times in any given run so I don't want to increase
the potential risk of code clashes with other branches for no
measurable gain.

13:06 Changeset [7580] by acc

Branch 2016/dev_merge_2016. Tidy wet_dry.F90 and remove redundant wad_istate routine (now done in WAD_TEST_CASES/MY_SRC/usrdef_istate.F90)

12:14 Changeset [7579] by davestorkey

Bug fixes to definitions of 3D Gent-Mc Williams? transport diagnostics in field_def.xml file.

11:00 user/flavoni/libIGCM_v4.0a edited by flavoni
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10:30 Changeset [7578] by timgraham

Branch to allow output diagnostics which are constant in our models

2017-01-18:

18:34 Ticket #1831 (Adding the ability to read character attributes using iom_getatt) closed by acc
fixed: Changes made and tested at Changeset [7577]
18:32 Changeset [7577] by acc

Branch dev_merge_2016. Tidy iom_getatt routine and add ability to read character attributes. See #1831 for details

18:26 Ticket #1831 (Adding the ability to read character attributes using iom_getatt) created by acc
= Context = iom_getatt is a generic routine that currently (in …
17:24 Ticket #1828 (undefined rdttra in tranxt.F90 in dev_merge_2016) closed by acc
fixed: Refers to dev_merge_2016. rdttra(jpk) no longer exists in the merge …
17:17 Changeset [7576] by acc

Branch dev_merge_2016. Quick fix for ticket #1828 (undefined rdttra)

16:43 Changeset [7575] by frrh

Remove svn keywords.

16:35 Changeset [7574] by frrh

#1821 Branch of branch to see if we can get generically
useful optimisations into GO6 based on Maff Glover's
work in MEDUSA configurations to replace pointers and
wrk_alloc/wrk_dealloc with direct ALLOCATE and
DEALLOCATE statements.

16:28 Changeset [7573] by timgraham

Fix for out of bounds array introduced at r7554 (cause of seg faults).

14:13 Ticket #1830 (Problem with restart from another simulation) created by omamce
Restart problem Experiences are coupled runs ORCA1_LIM3_PISCES
13:30 Changeset [7572] by hadjt

Committing to allow coder review to begin

Tidied Code.

Prepared DIA/diadct.F90 to produce netcdf files with IOM_put (in progress)
Prepared DIA/diaregmean.F90 to switch on PEA and kara MLD output (in progress)

12:48 user/flavoni/libIGCM_v4.0a edited by flavoni
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11:39 user/flavoni/libIGCM_v4.0a edited by flavoni
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11:36 user/flavoni/libIGCM_v4.0a edited by flavoni
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11:25 user/flavoni/libIGCM_v4.0a edited by flavoni
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11:17 user/flavoni/libIGCM_v4.0a edited by flavoni
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11:10 user/flavoni/libIGCM_v4.0a edited by flavoni
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11:08 user/flavoni/libIGCM_v4.0a edited by flavoni
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00:11 Users edited by nicolasmartin
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2017-01-17:

16:09 Users edited by nicolasmartin
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15:15 Users created by nicolasmartin
15:15 Tag change on Users by nicolasmartin
Tags user added
12:28 user/flavoni/libIGCM_v4.0a created by flavoni
11:33 Changeset [7571] by frrh

Commit first phase of changes - these work OK in a UKESM vn0.5
suite employing the GO6 package branch at:

branches/UKMO/dev_r5518_GO6_package@7206

10:34 Changeset [7570] by frrh

Clear svn keywords.

10:30 Changeset [7569] by frrh

Merge branches/NERC/dev_r5518_NOC_MEDUSA_Stable
from revision 5711 to 7498 inclusive.

10:17 Changeset [7568] by frrh

#1821. Alternative branch for MEDUSA optimisations since previous attempt failed
due to huge and insurmountable clashes with GO6 "package" branch.

2017-01-16:

20:11 Changeset [7567] by hadjt

CO6 version adapted for shelf seas climate projections, including added diagnostics

18:49 Changeset [7566] by hadjt

Clearing svn keywords

18:40 Changeset [7565] by hadjt

Adapting CO6 for use in climate projections, and adding diagnostics

18:37 Ticket #1829 (Changes to C06 for climate simulation and reanalysis) created by hadjt
= Context = Changes to C06 for climate simulation and reanalysis = Changes …
17:41 Ticket #1827 (compilation failure without key_ldfslp) closed by timgraham
fixed: Fixed at r7564
17:41 Changeset [7564] by timgraham

#1827 fix when for compilation of trdken.F90

17:36 Changeset [7563] by timgraham

Remove requirement for sali_ref_clim.nc file when key_diaar5 is set but thermosteric sea level variable is not requested
Requires MEDUSA branch r7543 to avoid a conflict

17:20 Ticket #1828 (undefined rdttra in tranxt.F90 in dev_merge_2016) created by emanuelaclementi
= Context = dev_merge_2016 from revision 7556 …
16:04 Ticket #1827 (compilation failure without key_ldfslp) created by rblod
= Context = With nemo_v3_6_STABLE, compilation without key_ldfslp fails …
15:52 Changeset [7562] by emanuelaclementi

#1811 Merge with dev_INGV_UKMO_2016: improve Stokes drift (including dynspg_ts , Stokes-Coriolis force , and GLS surface roughness)

14:42 Ticket #1825 (GYRE compilation with ifort fails) closed by timgraham
fixed: I've committed a fix for this at r7561. It's strange that this was ok …
14:41 Changeset [7561] by timgraham

#1825 fix. Add USE phycst in traadv_tvd.F90

14:15 Ticket #1826 (unneccessary print without iomput) created by rblod
= Context = Running what ever configuration without key_iomput, a print …
14:08 Ticket #1825 (GYRE compilation with ifort fails) created by rblod
= Context = Trying to compile GYRE with ifort on v3_6_STABLE rev 7555, …
10:59 Changeset [7560] by timgraham

Changes to remove erroneous output. NO RESULTS CHANGE.
1) traadv_tvd was causing trd_trc to be called when l_trdtrc=FALSE
2) zdf_mxl_zint was missing an IF(lwp) so output was being written from every processor.

10:43 Ticket #1824 (trd_trc is sometimes called from tra_adv_tvd even when l_trdtrc is false) closed by timgraham
fixed: Fixed at r7559
10:42 Changeset [7559] by timgraham

Fix for #1824. Stop erroneous calls to trd_trc from tra_adv_tvd

10:42 Ticket #1824 (trd_trc is sometimes called from tra_adv_tvd even when l_trdtrc is false) created by timgraham
= Context = trd_trc is sometimes called from tra_adv_tvd even when …

2017-01-13:

17:47 Changeset [7558] by emanuelaclementi

#1805 dev_INGV_UKMO_2016: updates in field_def.xml to save Stokes Drift Velocity components

17:43 Changeset [7557] by emanuelaclementi

#1805 dev_INGV_UKMO_2016: updates to save Stokes Drift Velocity components

17:23 Ticket #848 (agrif with sea-ice) reopened by nicolasmartin
Closed by mistake.
17:15 Ticket #848 (agrif with sea-ice) closed by antsia
fixed
14:48 Ticket #1823 (two bugs in tracer trends diagnostics at 3.6_STABLE) closed by davestorkey
fixed: Bug fixed in nemo_v_3_6_STABLE at revision 7555. I have also updated the …
14:46 Changeset [7556] by davestorkey

Updates for tracer trends diagnostics in dev_merge_2016:

  1. Add in calls for total trend diagnostics in tra_nxt.
  2. Fix bug in calculation of trd_zdfp as detailed in ticket #1823.
14:31 Changeset [7555] by davestorkey

Fix two bugs in tracer trends diagnostics. Ticket #1823.

14:16 Ticket #1823 (two bugs in tracer trends diagnostics at 3.6_STABLE) created by davestorkey
= Context = … = Analysis = There are two bugs in the tracer trends …
12:53 Changeset [7554] by davestorkey

Bug fixes for tracer trends:

  1. Bug fix for zdfp trend - fix to use avt rather than avt_k ie. include the convection in this diagnostic.
  2. Bug fix for Asselin filter trend.
10:03 Changeset [7553] by isabella

added switch data type

09:14 Changeset [7552] by isabella

added one switch ln_incpc_only to enable selection of IPC scheme only

2017-01-12:

16:04 Glossary edited by nicolasmartin
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15:58 Glossary edited by nicolasmartin
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12:18 Changeset [7551] by flavoni

doc pdf

10:28 Changeset [7550] by davestorkey

Add calls for total tracer trends diagnostics (one of the CMIP6 diagnostics) in tra_nxt.

2017-01-11:

17:15 Changeset [7549] by davestorkey

Correct calculation of total tracer trend. New calculation uses ta-tn rather than
ta-tb. This is cleaner since ta and tn are both non-time-filtered whereas tb is
time-filtered. The new variable passes the sanity check whereby the time mean of
the total trend multiplied by the time-interval gives the change between the start
and end fields.

16:59 Changeset [7548] by frrh

Apply ALLOCATE/POINTER optimisation to trcbio_medusa.F90 from scratch
since we can't use Maff's version directly without risking damaging
developments which have been added to the base code in recent months.
I've done this for the sake of completeness although MS's tests suggest
no huge advantage.

14:42 Changeset [7547] by acc

Branch dev_merge_2016. Added WAD documentation (temporary location) and tidied WAD_TEST_CASES module usrdef_nam.F90

14:25 2017WP/Shared Actions edited by cetlod
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13:37 Changeset [7546] by jamesharle

Correct for missing field definition wetdep when using xios2

12:27 Changeset [7545] by frrh

Apply Maff's changes with the exception of
NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90
which will clash with changes made to the source code since
the optimisation work started.

11:15 Changeset [7544] by timgraham

Fix to prevent large number of "You should not have seen this print" messages

11:10 Ticket #1822 (Wrong logical used in IF statement for tracer trends in traldf_iso) closed by timgraham
invalid: Closing as this is an error in a Met Office branch (not v3.6 Stable)
11:04 Ticket #1822 (Wrong logical used in IF statement for tracer trends in traldf_iso) created by timgraham
= Context = In the case where Active tracer trends are requested but …

2017-01-10:

17:54 2017WP/Shared Actions edited by gm
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17:52 Glossary edited by nicolasmartin
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17:49 Glossary edited by nicolasmartin
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17:18 Changeset [7543] by frrh

#1821. Reverse previous operation (erroneous copy of branch INTO this branch!)

17:10 Changeset [7542] by frrh

#1821. Optimisations for MEDUSA developed at the Met Office.

17:01 Changeset [7541] by frrh

#1821 Branch of the main NOC NERC MEDUSA_Stable branch for committal of Maff Glover's
optimisations and possible development of further optimisations by Marc Stringer
and Richard Hill.

17:00 Ticket #1821 (Develop optimisations for the GO6 and NOC MEDUSA branches) created by frrh
= Context = == Develop optimisations for the NOC MEDUSA branch == … …
16:42 Ticket #1616 (Email notification from Trac) closed by nicolasmartin
duplicate: The enhancement describing in this ticket is a part of the global action …
16:32 Glossary edited by nicolasmartin
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15:59 Changeset [7540] by davestorkey

Add option to coupled model fix for freshwater input from frozen land masses to force
ocean to read ice sheet masses from atmosphere at the beginning of an integration.

14:24 Changeset [7539] by flavoni

add pdf NEMO_book for 4.0 alpha

14:20 Ticket #1780 (Add missing bibliography) closed by flavoni
fixed: changes done in changeset:7538
14:17 Changeset [7538] by flavoni

update DOC 4.0alpha

12:09 Changeset [7537] by vancop

move albedos and snow thermal conductivity to namelist

10:59 Changeset [7536] by vancop

Clean limwri.F90

10:49 Changeset [7535] by flavoni

update sette_rpt

2017-01-09:

13:02 Changeset [7534] by flavoni

update sette_rpt

12:31 Changeset [7533] by flavoni

adapt comments to new nameos

2017-01-06:

16:55 Glossary edited by nicolasmartin
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16:54 Glossary edited by nicolasmartin
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16:15 Ticket #1820 (clios variable too short in ctl_nam subroutine) closed by timgraham
fixed: Fixed in nemo_v3_6_STABLE at r7531 and dev_merge_2016 at r7532.
16:14 Changeset [7532] by timgraham

Trivial fix for #1820. Committing to merge branch so it goes back onto trunk

16:13 Changeset [7531] by timgraham

Trivial fix for #1820

16:13 Changeset [7530] by kingr

Removing use of SSH increment in dynspg_ts - no longer applied directly in ssh_nxt.

16:10 Ticket #1820 (clios variable too short in ctl_nam subroutine) created by timgraham
= Context = In the ctl_nam subroutine clios is too short. Applies in the …
12:47 2017WP/Shared Actions edited by flavoni
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12:46 2017WP/Shared Actions edited by flavoni
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12:22 Changeset [7529] by flavoni

remove uncesessary

10:56 Changeset [7528] by flavoni

commit new field def with wdmask and wetdep to allow diawri.F90 to find variable wetdep

2017-01-05:

18:26 Changeset [7527] by acc

Branch 2016/dev_merge_2016. Changes to WAD_TEST_CASES to cope with wetting and drying above sea level

16:11 Changeset [7526] by flavoni

add debug options

11:28 2017WP/Shared Actions edited by emanuelaclementi
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11:28 2017WP/INGV edited by emanuelaclementi
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10:59 2017WP/Shared Actions edited by emanuelaclementi
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10:58 2017WP/INGV edited by emanuelaclementi
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10:43 2017WP/Shared Actions edited by timgraham
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2017-01-04:

17:47 Changeset [7525] by mocavero

changes after review

14:47 2017WP/INGV edited by emanuelaclementi
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14:44 2017WP/Shared Actions edited by emanuelaclementi
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14:37 Ticket #1819 (Wrong names in LIM3 restarts with number of ice categories > 9) created by jchanut
= Context = If the number of ice categories jpl ≥ 10, restarts are not …

2017-01-03:

18:37 Ticket #1817 (Uninitialized arrays in domzgr.F90) closed by mathiot
fixed: I agree on the suggested patch. Results of SETTE configuration are …
18:32 Changeset [7524] by mathiot

Fix for ticket #1817 (uninitialised misfdep/risfdep)

11:06 Changeset [7523] by cetlod

3.6stable: minor bugfix for Offline configuration with vvl

2017-01-02:

11:06 Changeset [7522] by cetlod

3.6 stable : update the offline routines to be able to run passive tracers offline with linear free surface, see ticket #1775

2016-12-29:

16:20 Changeset [7521] by cbricaud

correc bugs in crs branch

2016-12-28:

17:26 Changeset [7520] by cbricaud

cleaning and bug correction in CRS branch

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