Timeline
2017-02-01:
- 11:29 Changeset [7629] by
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Change in the PISCES diags
- 11:24 Changeset [7628] by
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Change in the ligands parameters
- 11:22 Changeset [7627] by
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change in the bacterial consumption of Fe + some more diags
2017-01-31:
- 17:06 Changeset [7626] by
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Added CO5 code to catch water below freezing, and reset to freezing point - based on code by Rachel Furner/Rob? King (http://fcm3/projects/NEMO/ticket/682). Also added a name list to switch this code on, and how it reports any freezing grid boxes - nam_tranxticing: nn_tranxticing; (0=Off; 1=Error; 2 Warn (verbose); 3 Warn (Quiet))
- 14:44 user/flavoni/libIGCM_v4.0a edited by
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(diff)
- 13:06 Changeset [7625] by
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Update the retrieval of pCO2 from FABM.
- 12:37 Changeset [7624] by
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update test lock and overflow with dev_merge_2016
- 12:26 Changeset [7623] by
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update lock_exchange with dev_merge_2016
- 11:10 Changeset [7622] by
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bad old name for output ISOMIP file
- 09:43 Changeset [7621] by
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Minor corrections
2017-01-30:
- 14:35 Changeset [7620] by
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Fix bug with momentum transfer in coupled mode
2017-01-28:
- 00:12 Changeset [7619] by
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bug correction in the declared fields
2017-01-27:
- 18:19 Changeset [7618] by
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update namelist_pisces in the quota code
- 18:17 Changeset [7617] by
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update diagnostics + changes in quota code
- 18:09 Changeset [7616] by
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Branch 2016/dev_merge_2016. Wetting and drying updates. Includes a slightly modified MY_SRC copy of domain.F90 to enable a north-south cyclic test domain (jperio=7). Other changes include fixes in usrdef_zgr.F90 to correct metrics on the northern boundary and a new test case (#8) which uses the north-south cyclic option.
- 16:43 Changeset [7615] by
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update for additional diags
- 15:27 ticket/1821/Branch Testing edited by
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- 14:47 user/flavoni/libIGCM_v4.0a edited by
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- 14:46 user/flavoni/libIGCM_v4.0a edited by
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- 14:41 user/flavoni/libIGCM_v4.0a edited by
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- 14:38 user/flavoni/libIGCM_v4.0a edited by
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- 13:12 ticket/1821/Branch Testing edited by
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- 13:07 ticket/1821/Branch Testing created by
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- 12:47 user/flavoni/libIGCM_v4.0a edited by
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- 10:43 user/flavoni/libIGCM_v4.0a edited by
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- 10:41 user/flavoni/libIGCM_v4.0a edited by
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- 10:39 user/flavoni/libIGCM_v4.0a edited by
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- 10:15 Changeset [7614] by
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Code changes to prevent water temperature falling below pressure-dependent freezing point
2017-01-26:
- 18:35 Changeset [7613] by
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Added namelist entries to effectively switch off region mean, pea and NOOS code. Also use correct nemo file open subroutines, rahter than low level open statements with fixed file ids (37 and 73)
- 12:35 Changeset [7612] by
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missing close tag in html pisces file
- 12:07 Changeset [7611] by
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JPALM — 26-01-2017 — Fix MOCSY depth0 init value
- 10:45 Changeset [7610] by
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Branch 2016/dev_merge_2016. Minor correction to WAD documentation and add in WAD_TEST_CASES/MY_SRC/bdyini.F90 which removes an apparently unnecessary restriction (to be checked) that would otherwise stop test case 7
2017-01-25:
- 19:12 Ticket #1835 (Uninitialized variable nn_dttrc used in iom.F90) created by
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= Context =
The variable nn_dttrc is not initialized when we run without …
- 17:43 Changeset [7609] by
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Branch 2016/dev_merge_2016. Additional WAD test case with a sinusoidally forced open boundary. Changes include additions to usrdef routines (WAD_TEST_CASES/MYSRC), configuration namelist and documentation only
- 17:30 Changeset [7608] by
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Create a branch to test limiting the min temp in CO6/AMM7
- 16:37 Changeset [7607] by
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v3.6 stable : add missing features for CMIP6 exercise, see ticket #1834
- 14:40 Glossary edited by
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(diff) - 14:07 Ticket #1834 (Missing features in 3.6 stable) created by
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Some features are missing in the 3.6 stable and are needed for CMIP6 …
- 13:01 Changeset [7606] by
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Fix some bugs introduced due to particularities of the branch revision; make some small improvements
- 12:14 New topic on Forks created by
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[FAQ] Test cases
- 12:13 New topic on Skilled created by
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[FAQ] Choosing options (natural and computer science), please read this before creating a new topic
- 12:05 New topic on Beginner created by
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[FAQ] Getting started with NEMO, please read this before creating a new topic
- 11:59 New forum News created by
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Ocean modelling events - Calls | Meetings | Sessions | {e-}Trainings | Webinars | Workshops
- 11:57 New forum Forks created by
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Unofficial resources (cfgs, repos, tools, etc) - Unsupported configurations, secondary repositories, available tools and utilities
- 11:55 New forum Skilled created by
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Natural & computer science - Additional answers on choosing savvy options
- 11:47 New forum Beginner created by
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Getting started with the ocean model - Download, install, compile and run reference configurations
- 11:29 Changeset [7605] by
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Added field for dynldf_c3d case
- 11:28 New topic on Tools created by
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[FAQ] Tools and Interfaces, please read this before creating a new topic
- 06:56 Ticket #1833 (Uninitialized arrays bfrua/bfrva in zdf_bfr_init) created by
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= Context =
The function zdf_bfr_init does not initialize arrays …
2017-01-24:
- 16:50 Changeset [7604] by
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fixed some typos
- 16:26 Changeset [7603] by
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update wrong names for pisces outputs
- 13:43 Changeset [7602] by
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Typo fix
- 13:39 Changeset [7601] by
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#1821 more changes to replace pointers with ALLOCATE in traldf_iso
2017-01-23:
- 19:26 Changeset [7600] by
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Changes as in branches/2016/dev_merge_2016@7562 (branches/2016/dev_INGV_UKMO_2016@7558)
- 16:12 Changeset [7599] by
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Fully working version
- 14:13 Changeset [7598] by
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Branch 2016/dev_merge_2016. Update Wetting and drying documentation (temporary location)
2017-01-20:
- 20:06 Glossary edited by
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(diff) - 19:55 Glossary edited by
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(diff)
- 19:43 Glossary edited by
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(diff)
- 19:40 Changeset [7597] by
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add the possibility to run without sea ice diffusion (by default)
- 18:56 Glossary edited by
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(diff)
- 18:50 Changeset [7596] by
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change namelist parameters names
- 18:43 Glossary edited by
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(diff)
- 18:29 Changeset [7595] by
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correct xml files for scalar outputs
- 18:28 Changeset [7594] by
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correct xml for scalar outputs
- 17:32 Changeset [7593] by
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Added xios output for DIA/diadct.F90 NOOS 25hr mean output (not touched hourly mean).
Added namelist switched for DIA/diaregmean.F90 to control output of PEA, MLD, and SBC variables
- 17:08 Changeset [7592] by
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Adding new files missed in previous commit.
- 16:53 Changeset [7591] by
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Addedd Kara ML code to avoid conflicts with branches/UKMO/CO6_KD490_amm7_oper
- 16:51 Changeset [7590] by
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Added diagnostics from operational version: Kara ML, diaopfoam, diurnal.
- 16:26 Changeset [7589] by
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Another bug
- 16:24 Changeset [7588] by
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Branch dev_merge_2016. Wetting and drying enhancements. Added the reading of bathymetry with land elevations (negative depths) from domain configuration files (if ln_wd is .true.). Also added better detection of convergence in the limiter iterations (wet_dry.F90)
- 16:17 Changeset [7587] by
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Branch dev_merge_2016. Added the writing and reading of attributes to the domain configuration (cfg_write and cfg_read in domain.F90). As an example, the domain configuration files now include the cn_cfg and nn_cfg values as attributes
- 16:15 Changeset [7586] by
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More bug fixes
- 16:06 Changeset [7585] by
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Bug fix
- 15:43 Ticket #1831 (Adding the ability to read character attributes using iom_getatt) closed by
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fixed: Changes made and tested at Changeset [7584]
- 15:42 Changeset [7584] by
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Branch dev_merge_2016. Added iom_putatt routine to enable writing of netcdf attributes to domain configuration files. See ticket #1831
- 15:39 Ticket #1831 (Adding the ability to read character attributes using iom_getatt) reopened by
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Reopened ticket in order to add iom_putatt routine which will enable the …
- 14:59 Changeset [7583] by
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Correction to background vertical diffusivity to account for spacial variation
- 14:53 Changeset [7582] by
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Added code to allow output of some diagnostics which are constant in Met Office CMIP6 models
Changes described in UKESM ticket 324 (https://code.metoffice.gov.uk/trac/UKESM/ticket/324)
- 11:49 Ticket #1832 (TKE source for vertical mixing must be reduced under the sea-ice (TKE ...) created by
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= Context =
2 options in zdftke.F90 module are concerned:
- TKE due …
2017-01-19:
- 19:54 Users edited by
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Tags ST added
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Tags help added
- 18:32 Ticket Guidelines/Modify Ticket Summary edited by
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- 18:15 Users edited by
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- 18:01 Users edited by
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- 17:59 Users edited by
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- 17:48 Users/Model Install created by
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- 17:40 Users edited by
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- 17:38 Users/Model Interfacing/Biogeochemistry Coarsening created by
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- 17:36 Users/Model Interfacing/Data Assimilation created by
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- 17:35 Users/Model Interfacing/Coupling created by
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- 17:34 Users/Model Interfacing/Inputs Outputs created by
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- 17:32 Users/Model Interfacing created by
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- 17:23 Users/Setup New Configuration created by
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- 17:22 Users/Reference Configurations created by
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- 17:00 2017WP/Shared Actions edited by
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(diff)
- 13:20 Changeset [7581] by
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#1821. Commit optimisations to replace pointers with allocatable
work arrays. This is based on MG's initial work, but I've added
traadv_tvd.F90 since this will be applicable more generally to NEMO
whilst traadv_muscl.F90 only applies if MEDUSA is active.
I've not bothered with fldread.F90 since this is only called a
handful of times in any given run so I don't want to increase
the potential risk of code clashes with other branches for no
measurable gain.
- 13:06 Changeset [7580] by
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Branch 2016/dev_merge_2016. Tidy wet_dry.F90 and remove redundant wad_istate routine (now done in WAD_TEST_CASES/MY_SRC/usrdef_istate.F90)
- 12:14 Changeset [7579] by
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Bug fixes to definitions of 3D Gent-Mc Williams? transport diagnostics in field_def.xml file.
- 11:00 user/flavoni/libIGCM_v4.0a edited by
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(diff)
- 10:30 Changeset [7578] by
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Branch to allow output diagnostics which are constant in our models
2017-01-18:
- 18:34 Ticket #1831 (Adding the ability to read character attributes using iom_getatt) closed by
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fixed: Changes made and tested at Changeset [7577]
- 18:32 Changeset [7577] by
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Branch dev_merge_2016. Tidy iom_getatt routine and add ability to read character attributes. See #1831 for details
- 18:26 Ticket #1831 (Adding the ability to read character attributes using iom_getatt) created by
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= Context =
iom_getatt is a generic routine that currently (in …
- 17:24 Ticket #1828 (undefined rdttra in tranxt.F90 in dev_merge_2016) closed by
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fixed: Refers to dev_merge_2016. rdttra(jpk) no longer exists in the merge …
- 17:17 Changeset [7576] by
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Branch dev_merge_2016. Quick fix for ticket #1828 (undefined rdttra)
- 16:43 Changeset [7575] by
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Remove svn keywords.
- 16:35 Changeset [7574] by
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#1821 Branch of branch to see if we can get generically
useful optimisations into GO6 based on Maff Glover's
work in MEDUSA configurations to replace pointers and
wrk_alloc/wrk_dealloc with direct ALLOCATE and
DEALLOCATE statements.
- 16:28 Changeset [7573] by
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Fix for out of bounds array introduced at r7554 (cause of seg faults).
- 14:13 Ticket #1830 (Problem with restart from another simulation) created by
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Restart problem
Experiences are coupled runs ORCA1_LIM3_PISCES …
- 13:30 Changeset [7572] by
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Committing to allow coder review to begin
Tidied Code.
Prepared DIA/diadct.F90 to produce netcdf files with IOM_put (in progress)
Prepared DIA/diaregmean.F90 to switch on PEA and kara MLD output (in progress)
- 12:48 user/flavoni/libIGCM_v4.0a edited by
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- 11:39 user/flavoni/libIGCM_v4.0a edited by
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- 11:36 user/flavoni/libIGCM_v4.0a edited by
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- 11:25 user/flavoni/libIGCM_v4.0a edited by
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- 11:17 user/flavoni/libIGCM_v4.0a edited by
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- 11:10 user/flavoni/libIGCM_v4.0a edited by
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- 11:08 user/flavoni/libIGCM_v4.0a edited by
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- 00:11 Users edited by
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2017-01-17:
- 16:09 Users edited by
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(diff)
- 15:15 Users created by
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Tags user added
- 12:28 user/flavoni/libIGCM_v4.0a created by
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- 11:33 Changeset [7571] by
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Commit first phase of changes - these work OK in a UKESM vn0.5
suite employing the GO6 package branch at:
branches/UKMO/dev_r5518_GO6_package@7206
- 10:34 Changeset [7570] by
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Clear svn keywords.
- 10:30 Changeset [7569] by
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Merge branches/NERC/dev_r5518_NOC_MEDUSA_Stable
from revision 5711 to 7498 inclusive.
- 10:17 Changeset [7568] by
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#1821. Alternative branch for MEDUSA optimisations since previous attempt failed
due to huge and insurmountable clashes with GO6 "package" branch.
2017-01-16:
- 20:11 Changeset [7567] by
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CO6 version adapted for shelf seas climate projections, including added diagnostics
- 18:49 Changeset [7566] by
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Clearing svn keywords
- 18:40 Changeset [7565] by
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Adapting CO6 for use in climate projections, and adding diagnostics
- 18:37 Ticket #1829 (Changes to C06 for climate simulation and reanalysis) created by
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= Context =
Changes to C06 for climate simulation and reanalysis
= Changes …
- 17:41 Ticket #1827 (compilation failure without key_ldfslp) closed by
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fixed: Fixed at r7564
- 17:41 Changeset [7564] by
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#1827 fix when for compilation of trdken.F90
- 17:36 Changeset [7563] by
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Remove requirement for sali_ref_clim.nc file when key_diaar5 is set but thermosteric sea level variable is not requested
Requires MEDUSA branch r7543 to avoid a conflict
- 17:20 Ticket #1828 (undefined rdttra in tranxt.F90 in dev_merge_2016) created by
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= Context =
dev_merge_2016 from revision 7556 …
- 16:04 Ticket #1827 (compilation failure without key_ldfslp) created by
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= Context =
With nemo_v3_6_STABLE, compilation without key_ldfslp fails … - 15:52 Changeset [7562] by
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#1811 Merge with dev_INGV_UKMO_2016: improve Stokes drift (including dynspg_ts , Stokes-Coriolis force , and GLS surface roughness)
- 14:42 Ticket #1825 (GYRE compilation with ifort fails) closed by
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fixed: I've committed a fix for this at r7561.
It's strange that this was ok …
- 14:41 Changeset [7561] by
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#1825 fix. Add USE phycst in traadv_tvd.F90
- 14:15 Ticket #1826 (unneccessary print without iomput) created by
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= Context =
Running what ever configuration without key_iomput, a print …
- 14:08 Ticket #1825 (GYRE compilation with ifort fails) created by
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= Context =
Trying to compile GYRE with ifort on v3_6_STABLE rev 7555, …
- 10:59 Changeset [7560] by
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Changes to remove erroneous output. NO RESULTS CHANGE.
1) traadv_tvd was causing trd_trc to be called when l_trdtrc=FALSE
2) zdf_mxl_zint was missing an IF(lwp) so output was being written from every processor.
- 10:43 Ticket #1824 (trd_trc is sometimes called from tra_adv_tvd even when l_trdtrc is false) closed by
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fixed: Fixed at r7559
- 10:42 Changeset [7559] by
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Fix for #1824. Stop erroneous calls to trd_trc from tra_adv_tvd
- 10:42 Ticket #1824 (trd_trc is sometimes called from tra_adv_tvd even when l_trdtrc is false) created by
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= Context =
trd_trc is sometimes called from tra_adv_tvd even when …
2017-01-13:
- 17:47 Changeset [7558] by
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#1805 dev_INGV_UKMO_2016: updates in field_def.xml to save Stokes Drift Velocity components
- 17:43 Changeset [7557] by
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#1805 dev_INGV_UKMO_2016: updates to save Stokes Drift Velocity components
- 17:23 Ticket #848 (agrif with sea-ice) reopened by
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Closed by mistake.
- 17:15 Ticket #848 (agrif with sea-ice) closed by
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fixed
- 14:48 Ticket #1823 (two bugs in tracer trends diagnostics at 3.6_STABLE) closed by
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fixed: Bug fixed in nemo_v_3_6_STABLE at revision 7555. I have also updated the …
- 14:46 Changeset [7556] by
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Updates for tracer trends diagnostics in dev_merge_2016:
- Add in calls for total trend diagnostics in tra_nxt.
- Fix bug in calculation of trd_zdfp as detailed in ticket #1823.
- 14:31 Changeset [7555] by
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Fix two bugs in tracer trends diagnostics. Ticket #1823.
- 14:16 Ticket #1823 (two bugs in tracer trends diagnostics at 3.6_STABLE) created by
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= Context =
…
= Analysis =
There are two bugs in the tracer trends …
- 12:53 Changeset [7554] by
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Bug fixes for tracer trends:
- Bug fix for zdfp trend - fix to use avt rather than avt_k ie. include the convection in this diagnostic.
- Bug fix for Asselin filter trend.
- 10:03 Changeset [7553] by
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added switch data type
- 09:14 Changeset [7552] by
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added one switch ln_incpc_only to enable selection of IPC scheme only
2017-01-12:
- 16:04 Glossary edited by
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(diff)
- 15:58 Glossary edited by
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(diff)
- 12:18 Changeset [7551] by
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doc pdf
- 10:28 Changeset [7550] by
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Add calls for total tracer trends diagnostics (one of the CMIP6 diagnostics) in tra_nxt.
2017-01-11:
- 17:15 Changeset [7549] by
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Correct calculation of total tracer trend. New calculation uses ta-tn rather than
ta-tb. This is cleaner since ta and tn are both non-time-filtered whereas tb is
time-filtered. The new variable passes the sanity check whereby the time mean of
the total trend multiplied by the time-interval gives the change between the start
and end fields.
- 16:59 Changeset [7548] by
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Apply ALLOCATE/POINTER optimisation to trcbio_medusa.F90 from scratch
since we can't use Maff's version directly without risking damaging
developments which have been added to the base code in recent months.
I've done this for the sake of completeness although MS's tests suggest
no huge advantage.
- 14:42 Changeset [7547] by
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Branch dev_merge_2016. Added WAD documentation (temporary location) and tidied WAD_TEST_CASES module usrdef_nam.F90
- 14:25 2017WP/Shared Actions edited by
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(diff)
- 13:37 Changeset [7546] by
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Correct for missing field definition wetdep when using xios2
- 12:27 Changeset [7545] by
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Apply Maff's changes with the exception of
NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90
which will clash with changes made to the source code since
the optimisation work started.
- 11:15 Changeset [7544] by
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Fix to prevent large number of "You should not have seen this print" messages
- 11:10 Ticket #1822 (Wrong logical used in IF statement for tracer trends in traldf_iso) closed by
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invalid: Closing as this is an error in a Met Office branch (not v3.6 Stable)
- 11:04 Ticket #1822 (Wrong logical used in IF statement for tracer trends in traldf_iso) created by
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= Context =
In the case where Active tracer trends are requested but …
2017-01-10:
- 17:54 2017WP/Shared Actions edited by
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(diff) - 17:52 Glossary edited by
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(diff)
- 17:49 Glossary edited by
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(diff)
- 17:18 Changeset [7543] by
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#1821. Reverse previous operation (erroneous copy of branch INTO this branch!)
- 17:10 Changeset [7542] by
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#1821. Optimisations for MEDUSA developed at the Met Office.
- 17:01 Changeset [7541] by
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#1821 Branch of the main NOC NERC MEDUSA_Stable branch for committal of Maff Glover's
optimisations and possible development of further optimisations by Marc Stringer
and Richard Hill.
- 17:00 Ticket #1821 (Develop optimisations for the GO6 and NOC MEDUSA branches) created by
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= Context =
== Develop optimisations for the NOC MEDUSA branch ==
…
…
- 16:42 Ticket #1616 (Email notification from Trac) closed by
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duplicate: The enhancement describing in this ticket is a part of the global action …
- 16:32 Glossary edited by
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(diff)
- 15:59 Changeset [7540] by
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Add option to coupled model fix for freshwater input from frozen land masses to force
ocean to read ice sheet masses from atmosphere at the beginning of an integration.
- 14:24 Changeset [7539] by
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add pdf NEMO_book for 4.0 alpha
- 14:20 Ticket #1780 (Add missing bibliography) closed by
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fixed: changes done in changeset:7538
- 14:17 Changeset [7538] by
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update DOC 4.0alpha
- 12:09 Changeset [7537] by
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move albedos and snow thermal conductivity to namelist
- 10:59 Changeset [7536] by
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Clean limwri.F90
- 10:49 Changeset [7535] by
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update sette_rpt
2017-01-09:
- 13:02 Changeset [7534] by
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update sette_rpt
- 12:31 Changeset [7533] by
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adapt comments to new nameos
2017-01-06:
- 16:55 Glossary edited by
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(diff)
- 16:54 Glossary edited by
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(diff)
- 16:15 Ticket #1820 (clios variable too short in ctl_nam subroutine) closed by
- 16:14 Changeset [7532] by
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Trivial fix for #1820. Committing to merge branch so it goes back onto trunk
- 16:13 Changeset [7531] by
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Trivial fix for #1820
- 16:13 Changeset [7530] by
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Removing use of SSH increment in dynspg_ts - no longer applied directly in ssh_nxt.
- 16:10 Ticket #1820 (clios variable too short in ctl_nam subroutine) created by
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= Context =
In the ctl_nam subroutine clios is too short. Applies in the …
- 12:47 2017WP/Shared Actions edited by
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(diff)
- 12:46 2017WP/Shared Actions edited by
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(diff)
- 12:22 Changeset [7529] by
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remove uncesessary
- 10:56 Changeset [7528] by
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commit new field def with wdmask and wetdep to allow diawri.F90 to find variable wetdep
2017-01-05:
- 18:26 Changeset [7527] by
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Branch 2016/dev_merge_2016. Changes to WAD_TEST_CASES to cope with wetting and drying above sea level
- 16:11 Changeset [7526] by
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add debug options
- 11:28 2017WP/Shared Actions edited by
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- 11:28 2017WP/INGV edited by
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- 10:59 2017WP/Shared Actions edited by
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- 10:58 2017WP/INGV edited by
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- 10:43 2017WP/Shared Actions edited by
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2017-01-04:
- 17:47 Changeset [7525] by
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changes after review
- 14:47 2017WP/INGV edited by
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(diff)
- 14:44 2017WP/Shared Actions edited by
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(diff)
- 14:37 Ticket #1819 (Wrong names in LIM3 restarts with number of ice categories > 9) created by
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= Context =
If the number of ice categories jpl ≥ 10, restarts are not …
2017-01-03:
- 18:37 Ticket #1817 (Uninitialized arrays in domzgr.F90) closed by
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fixed: I agree on the suggested patch. Results of SETTE configuration are …
- 18:32 Changeset [7524] by
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Fix for ticket #1817 (uninitialised misfdep/risfdep)
- 11:06 Changeset [7523] by
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3.6stable: minor bugfix for Offline configuration with vvl
2017-01-02:
- 11:06 Changeset [7522] by
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3.6 stable : update the offline routines to be able to run passive tracers offline with linear free surface, see ticket #1775
