Changeset 3295
- Timestamp:
- 2012-01-30T16:49:07+01:00 (12 years ago)
- Location:
- trunk/NEMOGCM
- Files:
-
- 1 added
- 20 edited
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CONFIG/AMM12_PISCES/EXP00/iodef.xml (modified) (8 diffs)
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CONFIG/AMM12_PISCES/EXP00/namelist_pisces (modified) (1 diff)
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CONFIG/AMM12_PISCES/EXP00/namelist_top (modified) (6 diffs)
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CONFIG/ORCA2_LIM_PISCES/EXP00/iodef.xml (modified) (5 diffs)
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CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_top (modified) (3 diffs)
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CONFIG/ORCA2_OFF_PISCES/EXP00/iodef.xml (modified) (5 diffs)
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CONFIG/ORCA2_OFF_PISCES/EXP00/namelist_top (modified) (3 diffs)
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CONFIG/cfg.txt (modified) (1 diff)
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NEMO/TOP_SRC/PISCES/p4zlys.F90 (modified) (1 diff)
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NEMO/TOP_SRC/PISCES/p4zmeso.F90 (modified) (1 diff)
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NEMO/TOP_SRC/PISCES/p4zmicro.F90 (modified) (1 diff)
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NEMO/TOP_SRC/PISCES/p4zmort.F90 (modified) (1 diff)
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NEMO/TOP_SRC/PISCES/p4zprod.F90 (modified) (2 diffs)
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NEMO/TOP_SRC/PISCES/p4zrem.F90 (modified) (3 diffs)
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NEMO/TOP_SRC/PISCES/p4zsed.F90 (modified) (2 diffs)
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NEMO/TOP_SRC/PISCES/p4zsink.F90 (modified) (2 diffs)
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NEMO/TOP_SRC/PISCES/par_pisces.F90 (modified) (3 diffs)
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NEMO/TOP_SRC/PISCES/trcini_pisces.F90 (modified) (1 diff)
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NEMO/TOP_SRC/PISCES/trcsms_pisces.F90 (modified) (1 diff)
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NEMO/TOP_SRC/PISCES/trcwri_pisces.F90 (added)
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NEMO/TOP_SRC/trcwri.F90 (modified) (2 diffs)
Legend:
- Unmodified
- Added
- Removed
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trunk/NEMOGCM/CONFIG/AMM12_PISCES/EXP00/iodef.xml
r3126 r3295 136 136 <field id="utau" description="Wind Stress along i-axis" unit="N/m2" axis_ref="none" /> 137 137 <field id="uoce" description="ocean current along i-axis" unit="m/s" /> 138 <field id="uocetr_eff" description="Effective ocean transport along i-axis" unit="m3/s"/>138 <field id="uocetr_eff" description="Effective ocean transport along i-axis" unit="m3/s" /> 139 139 <!-- uoce_eiv: available with key_traldf_eiv and key_diaeiv --> 140 140 <field id="uoce_eiv" description="EIV ocean current along i-axis" unit="m/s" /> … … 154 154 <field id="vtau" description="Wind Stress along j-axis" unit="N/m2" axis_ref="none" /> 155 155 <field id="voce" description="ocean current along j-axis" unit="m/s" /> 156 <field id="vocetr_eff" description="Effective ocean transport along j-axis" unit="m3/s"/>156 <field id="vocetr_eff" description="Effective ocean tra,sport along j-axis" unit="m3/s" /> 157 157 <!-- voce_eiv: available with key_traldf_eiv and key_diaeiv --> 158 158 <field id="voce_eiv" description="EIV ocean current along j-axis" unit="m/s" /> … … 171 171 <group id="grid_W" axis_ref="depthw" grid_ref="grid_W"> 172 172 <field id="woce" description="ocean vertical velocity" unit="m/s" /> 173 <field id="wocetr_eff" description="effective ocean vertical transport" unit="m3/s" />173 <field id="wocetr_eff" description="effective ocean vertical transport" unit="m3/s" /> 174 174 <!-- woce_eiv: available with key_traldf_eiv and key_diaeiv --> 175 175 <field id="woce_eiv" description="EIV ocean vertical velocity" unit="m/s" /> … … 219 219 <!-- ptrc on T grid --> 220 220 221 <group id="ptrc_T" axis_ref="deptht" grid_ref="grid_T"> 222 <field id="DIC" description="Dissolved inorganic Concentration" unit="m olC/L" />223 <field id="Alkalini" description="Total Alkalinity Concentration" unit=" eq/L" />224 <field id="O2" description="Oxygen Concentration" unit="m olO2/L" />225 <field id="CaCO3" description="Calcite Concentration" unit="m olC/L" />226 <field id="PO4" description="Phosphate Concentration" unit="m olC/L" />227 <field id="POC" description="Small organic carbon Concentration" unit="m olC/L" />228 <field id="Si" description="Silicate Concentration" unit="m olSi/L" />229 <field id="PHY" description="Nanophytoplankton Concentration" unit="m olC/L" />230 <field id="ZOO" description="Microzooplankton Concentration" unit="m olC/L" />231 <field id="DOC" description="Dissolved organic Concentration" unit="m olC/L" />232 <field id="PHY2" description="Diatoms Concentration" unit="m olC/L" />233 <field id="ZOO2" description="Mesozooplankton Concentration" unit="m olC/L" />234 <field id=" BSi" description="Diatoms Silicate Concentration" unit="molC/L" />235 <field id="Fer" description="Dissolved Iron Concentration" unit="m olFe/L" />236 <field id="BFe" description="Big iron particles Concentration" unit="m olFe/L" />237 <field id="GOC" description="Big organic carbon Concentration" unit="m olC/L" />238 <field id="SFe" description="Small iron particles Concentration" unit="m olFe/L" />239 <field id="DFe" description="Diatoms iron Concentration" unit="m olFe/L" />240 <field id=" DSi" description="Sinking biogenic Silicate Concentration" unit="molC/L" />241 <field id="NFe" description="Nano iron Concentration" unit="m olC/L" />242 <field id="NCHL" description="Nano chlorophyl Concentration" unit=" gChl/L" />243 <field id="DCHL" description="Diatoms chlorophyl Concentration" unit=" gChl/L" />244 <field id="NO3" description="Nitrates Concentration" unit="m olC/L" />245 <field id="NH4" description="Ammonium Concentration" unit="m olC/L" />221 <group id="ptrc_T" axis_ref="deptht" grid_ref="grid_T"> 222 <field id="DIC" description="Dissolved inorganic Concentration" unit="mmol/m3" /> 223 <field id="Alkalini" description="Total Alkalinity Concentration" unit="mmol/m3" /> 224 <field id="O2" description="Oxygen Concentration" unit="mmol/m3" /> 225 <field id="CaCO3" description="Calcite Concentration" unit="mmol/m3" /> 226 <field id="PO4" description="Phosphate Concentration" unit="mmol/m3" /> 227 <field id="POC" description="Small organic carbon Concentration" unit="mmol/m3" /> 228 <field id="Si" description="Silicate Concentration" unit="mmol/m3" /> 229 <field id="PHY" description="Nanophytoplankton Concentration" unit="mmol/m3" /> 230 <field id="ZOO" description="Microzooplankton Concentration" unit="mmol/m3" /> 231 <field id="DOC" description="Dissolved organic Concentration" unit="mmol/m3" /> 232 <field id="PHY2" description="Diatoms Concentration" unit="mmol/m3" /> 233 <field id="ZOO2" description="Mesozooplankton Concentration" unit="mmol/m3" /> 234 <field id="DSi" description="Diatoms Silicate Concentration" unit="mmol/m3" /> 235 <field id="Fer" description="Dissolved Iron Concentration" unit="mmol/m3" /> 236 <field id="BFe" description="Big iron particles Concentration" unit="mmol/m3" /> 237 <field id="GOC" description="Big organic carbon Concentration" unit="mmol/m3" /> 238 <field id="SFe" description="Small iron particles Concentration" unit="mmol/m3" /> 239 <field id="DFe" description="Diatoms iron Concentration" unit="mmol/m3" /> 240 <field id="GSi" description="Sinking biogenic Silicate Concentration" unit="mmol/m3" /> 241 <field id="NFe" description="Nano iron Concentration" unit="mmol/m3" /> 242 <field id="NCHL" description="Nano chlorophyl Concentration" unit="mg/m3" /> 243 <field id="DCHL" description="Diatoms chlorophyl Concentration" unit="mg/m3" /> 244 <field id="NO3" description="Nitrates Concentration" unit="mmol/m3" /> 245 <field id="NH4" description="Ammonium Concentration" unit="mmol/m3" /> 246 246 </group> 247 247 … … 249 249 250 250 <group id="diad_T" axis_ref="none" grid_ref="grid_T"> 251 <field id="PH" description="PH" unit="-" axis_ref="deptht" /> 252 <field id="CO3" description="Bicarbonates" unit="mol/L" axis_ref="deptht" /> 253 <field id="CO3sat" description="CO3 saturation" unit="mol/L" axis_ref="deptht" /> 254 <field id="PAR" description="Photosynthetically Available Radiation" unit="W/m2" axis_ref="deptht" /> 255 <field id="PPPHY" description="Primary production of nanophyto" unit="molC/m3/s" axis_ref="deptht" /> 256 <field id="PPPHY2" description="Primary production of diatoms" unit="molC/m3/s" axis_ref="deptht" /> 257 <field id="PPNEWN" description="New Primary production of nanophyto" unit="molC/m3/s" axis_ref="deptht" /> 258 <field id="PPNEWD" description="New Primary production of diatoms" unit="molC/m3/s" axis_ref="deptht" /> 259 <field id="PBSi" description="Primary production of Si diatoms" unit="molSi/m3/s" axis_ref="deptht" /> 260 <field id="PFeN" description="Primary production of nano iron" unit="molFe/m3/s" axis_ref="deptht" /> 261 <field id="PFeD" description="Primary production of diatoms iron" unit="molFe/m3/s" axis_ref="deptht" /> 262 <field id="PCAL" description="Calcite production" unit="molC/m3/s" axis_ref="deptht" /> 263 <field id="DCAL" description="Calcite dissolution" unit="molC/m3/s" axis_ref="deptht" /> 264 <field id="GRAZ" description="Grazing by zooplankton" unit="molC/m3/s" axis_ref="deptht" /> 265 <field id="Nfix" description="Nitrogen fixation at surface" unit="molN/m2/s" /> 266 <field id="EPC100" description="Export of carbon particles at 100 m" unit="molC/m2/s" /> 267 <field id="EPFE100" description="Export of biogenic iron at 100 m" unit="molFe/m2/s" /> 268 <field id="EPSI100" description="Export of Silicate at 100 m" unit="molSi/m2/s" /> 269 <field id="EPCAL100" description="Export of Calcite at 100 m" unit="molC/m2/s" /> 270 <field id="Cflx" description="DIC flux" unit="molC/m2/s" /> 271 <field id="Oflx" description="Oxygen flux" unit="molC/m2/s" /> 272 <field id="Kg" description="Gas transfer" unit="molC/m2/s/uatm" /> 273 <field id="Dpco2" description="Delta CO2" unit="uatm" /> 274 <field id="Dpo2" description="Delta O2" unit="uatm" /> 275 <field id="Heup" description="Euphotic layer depth" unit="m" /> 276 <field id="Irondep" description="Iron deposition" unit="molFe/m2/s" /> 251 <field id="PH" description="PH" unit="-" axis_ref="deptht" /> 252 <field id="CO3" description="Bicarbonates" unit="mol/m3" axis_ref="deptht" /> 253 <field id="CO3sat" description="CO3 saturation" unit="mol/m3" axis_ref="deptht" /> 254 <field id="PAR" description="Photosynthetically Available Radiation" unit="W/m2" axis_ref="deptht" /> 255 <field id="PPPHY" description="Primary production of nanophyto" unit="mol/m3/s" axis_ref="deptht" /> 256 <field id="PPPHY2" description="Primary production of diatoms" unit="mol/m3/s" axis_ref="deptht" /> 257 <field id="PPNEWN" description="New Primary production of nanophyto" unit="mol/m3/s" axis_ref="deptht" /> 258 <field id="PPNEWD" description="New Primary production of diatoms" unit="mol/m3/s" axis_ref="deptht" /> 259 <field id="PBSi" description="Primary production of Si diatoms" unit="mol/m3/s" axis_ref="deptht" /> 260 <field id="PFeN" description="Primary production of nano iron" unit="mol/m3/s" axis_ref="deptht" /> 261 <field id="PFeD" description="Primary production of diatoms iron" unit="mol/m3/s" axis_ref="deptht" /> 262 <field id="PCAL" description="Calcite production" unit="mol/m3/s" axis_ref="deptht" /> 263 <field id="DCAL" description="Calcite dissolution" unit="mol/m3/s" axis_ref="deptht" /> 264 <field id="GRAZ" description="Grazing by zooplankton" unit="mol/m3/s" axis_ref="deptht" /> 265 <field id="Mumax" description="Maximum growth rate" unit="s-1" axis_ref="deptht" /> 266 <field id="MuN" description="Realized growth rate for nanophyto" unit="s-1" axis_ref="deptht" /> 267 <field id="MuD" description="Realized growth rate for diatomes" unit="s-1" axis_ref="deptht" /> 268 <field id="MuNlight" description="Light limited growth rate for nanophyto" unit="s-1" axis_ref="deptht" /> 269 <field id="MuDlight" description="Light limited growth rate for diatomes" unit="s-1" axis_ref="deptht" /> 270 <field id="LNnut" description="Nutrient limitation term in Nanophyto" unit="-" axis_ref="deptht" /> 271 <field id="LDnut" description="Nutrient limitation term in Diatoms" unit="-" axis_ref="deptht" /> 272 <field id="LNFe" description="Iron limitation term in Nanophyto" unit="-" axis_ref="deptht" /> 273 <field id="LDFe" description="Iron limitation term in Diatoms" unit="-" axis_ref="deptht" /> 274 <field id="LNlight" description="Light limitation term in Nanophyto" unit="-" axis_ref="deptht" /> 275 <field id="LDlight" description="Light limitation term in Diatoms" unit="-" axis_ref="deptht" /> 276 <field id="Nfix" description="Nitrogen fixation at surface" unit="mol/m2/s" /> 277 <field id="EPC100" description="Export of carbon particles at 100 m" unit="mol/m2/s" /> 278 <field id="EPFE100" description="Export of biogenic iron at 100 m" unit="mol/m2/s" /> 279 <field id="EPSI100" description="Export of Silicate at 100 m" unit="mol/m2/s" /> 280 <field id="EPCAL100" description="Export of Calcite at 100 m" unit="mol/m2/s" /> 281 <field id="Cflx" description="DIC flux" unit="mol/m2/s" /> 282 <field id="Oflx" description="Oxygen flux" unit="mol/m2/s" /> 283 <field id="Kg" description="Gas transfer" unit="mol/m2/s/uatm" /> 284 <field id="Dpco2" description="Delta CO2" unit="uatm" /> 285 <field id="Dpo2" description="Delta O2" unit="uatm" /> 286 <field id="Heup" description="Euphotic layer depth" unit="m" /> 287 <field id="Irondep" description="Iron deposition" unit="mol/m2/s" /> 277 288 </group> 278 289 … … 478 489 <field ref="PHY2" /> 479 490 <field ref="ZOO2" /> 480 <field ref=" BSi" />491 <field ref="DSi" /> 481 492 <field ref="Fer" /> 482 493 <field ref="BFe" /> … … 484 495 <field ref="SFe" /> 485 496 <field ref="DFe" /> 486 <field ref=" DSi" />497 <field ref="GSi" /> 487 498 <field ref="NFe" /> 488 499 <field ref="NCHL" /> … … 507 518 <field ref="DCAL" /> 508 519 <field ref="GRAZ" /> 520 <field ref="Mumax" /> 521 <field ref="MuN" /> 522 <field ref="MuD" /> 523 <field ref="MuNlight" /> 524 <field ref="MuDlight" /> 525 <field ref="LNnut" /> 526 <field ref="LDnut" /> 527 <field ref="LNFe" /> 528 <field ref="LDFe" /> 529 <field ref="LNlight" /> 530 <field ref="LDlight" /> 509 531 <field ref="EPC100" /> 510 532 <field ref="EPFE100" /> -
trunk/NEMOGCM/CONFIG/AMM12_PISCES/EXP00/namelist_pisces
r3177 r3295 222 222 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 223 223 ln_pisdmp = .true. ! Relaxation fo some tracers to a mean value 224 nn_pisdmp = 5475! Frequency of Relaxation224 nn_pisdmp = 210240 ! Frequency of Relaxation 225 225 / 226 226 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' -
trunk/NEMOGCM/CONFIG/AMM12_PISCES/EXP00/namelist_top
r3116 r3295 13 13 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 14 14 nn_dttrc = 1 ! time step frequency for passive sn_tracers 15 nn_writetrc = 10! time step frequency for sn_tracer outputs15 nn_writetrc = 576 ! time step frequency for sn_tracer outputs 16 16 ln_rsttr = .false. ! start from a restart file (T) or not (F) 17 17 nn_rsttr = 0 ! restart control = 0 initial time step is not compared to the restart file value … … 20 20 cn_trcrst_in = "restart_trc" ! suffix of pass. sn_tracer restart name (input) 21 21 cn_trcrst_out = "restart_trc" ! suffix of pass. sn_tracer restart name (output) 22 ln_trcdta = . false. ! Initialisation from data input file (T) or not (F)22 ln_trcdta = .true. ! Initialisation from data input file (T) or not (F) 23 23 ! 24 ! ! name ! title of the field ! units! initial data ! save !25 ! ! ! !! from file ! or not !26 ! ! ! !! or not ! !24 ! ! name ! title of the field ! initial data ! initial data ! save ! 25 ! ! ! ! units ! from file ! or not ! 26 ! ! ! ! ! or not ! ! 27 27 sn_tracer(1) = 'DIC ' , 'Dissolved inorganic Concentration ', 'mol-C/L' , .true. , .true. 28 28 sn_tracer(2) = 'Alkalini' , 'Total Alkalinity Concentration ', 'eq/L ' , .true. , .true. … … 37 37 sn_tracer(11) = 'PHY2 ' , 'Diatoms Concentration ', 'mol-C/L' , .false. , .true. 38 38 sn_tracer(12) = 'ZOO2 ' , 'Mesozooplankton Concentration ', 'mol-C/L' , .false. , .true. 39 sn_tracer(13) = ' BSi ' , 'Diatoms Silicate Concentration ', 'mol-C/L' , .false. , .true.39 sn_tracer(13) = 'DSi ' , 'Diatoms Silicate Concentration ', 'mol-C/L' , .false. , .true. 40 40 sn_tracer(14) = 'Fer ' , 'Dissolved Iron Concentration ', 'mol-C/L' , .true. , .true. 41 41 sn_tracer(15) = 'BFe ' , 'Big iron particles Concentration ', 'mol-C/L' , .false. , .true. … … 43 43 sn_tracer(17) = 'SFe ' , 'Small iron particles Concentration ', 'mol-C/L' , .false. , .true. 44 44 sn_tracer(18) = 'DFe ' , 'Diatoms iron Concentration ', 'mol-C/L' , .false. , .true. 45 sn_tracer(19) = ' DSi ' , 'Sinking biogenic Silicate Concentration', 'mol-C/L' , .false. , .true.45 sn_tracer(19) = 'GSi ' , 'Sinking biogenic Silicate Concentration', 'mol-C/L' , .false. , .true. 46 46 sn_tracer(20) = 'NFe ' , 'Nano iron Concentration ', 'mol-C/L' , .false. , .true. 47 47 sn_tracer(21) = 'NCHL ' , 'Nano chlorophyl Concentration ', 'mol-C/L' , .false. , .true. … … 130 130 ! or mixed-layer trends ('key_trdmld_trc') 131 131 !---------------------------------------------------------------------- 132 nn_trd_trc = 5 475! time step frequency and tracers trends132 nn_trd_trc = 576 ! time step frequency and tracers trends 133 133 nn_ctls_trc = 0 ! control surface type in mixed-layer trends (0,1 or n<jpk) 134 134 rn_ucf_trc = 1 ! unit conversion factor (=1 -> /seconds ; =86400. -> /day) … … 142 142 &namtrc_dia ! parameters for passive tracer additional diagnostics 143 143 !---------------------------------------------------------------------- 144 ln_diatrc = . false.! save additional diag. (T) or not (F)145 nn_writedia = 5 475! time step frequency for diagnostics144 ln_diatrc = .true. ! save additional diag. (T) or not (F) 145 nn_writedia = 576 ! time step frequency for diagnostics 146 146 / -
trunk/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/iodef.xml
r3294 r3295 219 219 <!-- ptrc on T grid --> 220 220 221 <group id="ptrc_T" axis_ref="deptht" grid_ref="grid_T"> 222 <field id="DIC" description="Dissolved inorganic Concentration" unit="m olC/L" />223 <field id="Alkalini" description="Total Alkalinity Concentration" unit=" eq/L" />224 <field id="O2" description="Oxygen Concentration" unit="m olO2/L" />225 <field id="CaCO3" description="Calcite Concentration" unit="m olC/L" />226 <field id="PO4" description="Phosphate Concentration" unit="m olC/L" />227 <field id="POC" description="Small organic carbon Concentration" unit="m olC/L" />228 <field id="Si" description="Silicate Concentration" unit="m olSi/L" />229 <field id="PHY" description="Nanophytoplankton Concentration" unit="m olC/L" />230 <field id="ZOO" description="Microzooplankton Concentration" unit="m olC/L" />231 <field id="DOC" description="Dissolved organic Concentration" unit="m olC/L" />232 <field id="PHY2" description="Diatoms Concentration" unit="m olC/L" />233 <field id="ZOO2" description="Mesozooplankton Concentration" unit="m olC/L" />234 <field id=" BSi" description="Diatoms Silicate Concentration" unit="molC/L" />235 <field id="Fer" description="Dissolved Iron Concentration" unit="m olFe/L" />236 <field id="BFe" description="Big iron particles Concentration" unit="m olFe/L" />237 <field id="GOC" description="Big organic carbon Concentration" unit="m olC/L" />238 <field id="SFe" description="Small iron particles Concentration" unit="m olFe/L" />239 <field id="DFe" description="Diatoms iron Concentration" unit="m olFe/L" />240 <field id=" DSi" description="Sinking biogenic Silicate Concentration" unit="molC/L" />241 <field id="NFe" description="Nano iron Concentration" unit="m olC/L" />242 <field id="NCHL" description="Nano chlorophyl Concentration" unit=" gChl/L" />243 <field id="DCHL" description="Diatoms chlorophyl Concentration" unit=" gChl/L" />244 <field id="NO3" description="Nitrates Concentration" unit="m olC/L" />245 <field id="NH4" description="Ammonium Concentration" unit="m olC/L" />221 <group id="ptrc_T" axis_ref="deptht" grid_ref="grid_T"> 222 <field id="DIC" description="Dissolved inorganic Concentration" unit="mmol/m3" /> 223 <field id="Alkalini" description="Total Alkalinity Concentration" unit="mmol/m3" /> 224 <field id="O2" description="Oxygen Concentration" unit="mmol/m3" /> 225 <field id="CaCO3" description="Calcite Concentration" unit="mmol/m3" /> 226 <field id="PO4" description="Phosphate Concentration" unit="mmol/m3" /> 227 <field id="POC" description="Small organic carbon Concentration" unit="mmol/m3" /> 228 <field id="Si" description="Silicate Concentration" unit="mmol/m3" /> 229 <field id="PHY" description="Nanophytoplankton Concentration" unit="mmol/m3" /> 230 <field id="ZOO" description="Microzooplankton Concentration" unit="mmol/m3" /> 231 <field id="DOC" description="Dissolved organic Concentration" unit="mmol/m3" /> 232 <field id="PHY2" description="Diatoms Concentration" unit="mmol/m3" /> 233 <field id="ZOO2" description="Mesozooplankton Concentration" unit="mmol/m3" /> 234 <field id="DSi" description="Diatoms Silicate Concentration" unit="mmol/m3" /> 235 <field id="Fer" description="Dissolved Iron Concentration" unit="mmol/m3" /> 236 <field id="BFe" description="Big iron particles Concentration" unit="mmol/m3" /> 237 <field id="GOC" description="Big organic carbon Concentration" unit="mmol/m3" /> 238 <field id="SFe" description="Small iron particles Concentration" unit="mmol/m3" /> 239 <field id="DFe" description="Diatoms iron Concentration" unit="mmol/m3" /> 240 <field id="GSi" description="Sinking biogenic Silicate Concentration" unit="mmol/m3" /> 241 <field id="NFe" description="Nano iron Concentration" unit="mmol/m3" /> 242 <field id="NCHL" description="Nano chlorophyl Concentration" unit="mg/m3" /> 243 <field id="DCHL" description="Diatoms chlorophyl Concentration" unit="mg/m3" /> 244 <field id="NO3" description="Nitrates Concentration" unit="mmol/m3" /> 245 <field id="NH4" description="Ammonium Concentration" unit="mmol/m3" /> 246 246 </group> 247 247 … … 249 249 250 250 <group id="diad_T" axis_ref="none" grid_ref="grid_T"> 251 <field id="PH" description="PH" unit="-" axis_ref="deptht" /> 252 <field id="CO3" description="Bicarbonates" unit="mol/L" axis_ref="deptht" /> 253 <field id="CO3sat" description="CO3 saturation" unit="mol/L" axis_ref="deptht" /> 254 <field id="PAR" description="Photosynthetically Available Radiation" unit="W/m2" axis_ref="deptht" /> 255 <field id="PPPHY" description="Primary production of nanophyto" unit="molC/m3/s" axis_ref="deptht" /> 256 <field id="PPPHY2" description="Primary production of diatoms" unit="molC/m3/s" axis_ref="deptht" /> 257 <field id="PPNEWN" description="New Primary production of nanophyto" unit="molC/m3/s" axis_ref="deptht" /> 258 <field id="PPNEWD" description="New Primary production of diatoms" unit="molC/m3/s" axis_ref="deptht" /> 259 <field id="PBSi" description="Primary production of Si diatoms" unit="molSi/m3/s" axis_ref="deptht" /> 260 <field id="PFeN" description="Primary production of nano iron" unit="molFe/m3/s" axis_ref="deptht" /> 261 <field id="PFeD" description="Primary production of diatoms iron" unit="molFe/m3/s" axis_ref="deptht" /> 262 <field id="PCAL" description="Calcite production" unit="molC/m3/s" axis_ref="deptht" /> 263 <field id="DCAL" description="Calcite dissolution" unit="molC/m3/s" axis_ref="deptht" /> 264 <field id="GRAZ" description="Grazing by zooplankton" unit="molC/m3/s" axis_ref="deptht" /> 265 <field id="Nfix" description="Nitrogen fixation at surface" unit="molN/m2/s" /> 266 <field id="EPC100" description="Export of carbon particles at 100 m" unit="molC/m2/s" /> 267 <field id="EPFE100" description="Export of biogenic iron at 100 m" unit="molFe/m2/s" /> 268 <field id="EPSI100" description="Export of Silicate at 100 m" unit="molSi/m2/s" /> 269 <field id="EPCAL100" description="Export of Calcite at 100 m" unit="molC/m2/s" /> 270 <field id="Cflx" description="DIC flux" unit="molC/m2/s" /> 271 <field id="Oflx" description="Oxygen flux" unit="molC/m2/s" /> 272 <field id="Kg" description="Gas transfer" unit="molC/m2/s/uatm" /> 273 <field id="Dpco2" description="Delta CO2" unit="uatm" /> 274 <field id="Dpo2" description="Delta O2" unit="uatm" /> 275 <field id="Heup" description="Euphotic layer depth" unit="m" /> 276 <field id="Irondep" description="Iron deposition" unit="molFe/m2/s" /> 251 <field id="PH" description="PH" unit="-" axis_ref="deptht" /> 252 <field id="CO3" description="Bicarbonates" unit="mol/m3" axis_ref="deptht" /> 253 <field id="CO3sat" description="CO3 saturation" unit="mol/m3" axis_ref="deptht" /> 254 <field id="PAR" description="Photosynthetically Available Radiation" unit="W/m2" axis_ref="deptht" /> 255 <field id="PPPHY" description="Primary production of nanophyto" unit="mol/m3/s" axis_ref="deptht" /> 256 <field id="PPPHY2" description="Primary production of diatoms" unit="mol/m3/s" axis_ref="deptht" /> 257 <field id="PPNEWN" description="New Primary production of nanophyto" unit="mol/m3/s" axis_ref="deptht" /> 258 <field id="PPNEWD" description="New Primary production of diatoms" unit="mol/m3/s" axis_ref="deptht" /> 259 <field id="PBSi" description="Primary production of Si diatoms" unit="mol/m3/s" axis_ref="deptht" /> 260 <field id="PFeN" description="Primary production of nano iron" unit="mol/m3/s" axis_ref="deptht" /> 261 <field id="PFeD" description="Primary production of diatoms iron" unit="mol/m3/s" axis_ref="deptht" /> 262 <field id="PCAL" description="Calcite production" unit="mol/m3/s" axis_ref="deptht" /> 263 <field id="DCAL" description="Calcite dissolution" unit="mol/m3/s" axis_ref="deptht" /> 264 <field id="GRAZ" description="Grazing by zooplankton" unit="mol/m3/s" axis_ref="deptht" /> 265 <field id="Mumax" description="Maximum growth rate" unit="s-1" axis_ref="deptht" /> 266 <field id="MuN" description="Realized growth rate for nanophyto" unit="s-1" axis_ref="deptht" /> 267 <field id="MuD" description="Realized growth rate for diatomes" unit="s-1" axis_ref="deptht" /> 268 <field id="MuNlight" description="Light limited growth rate for nanophyto" unit="s-1" axis_ref="deptht" /> 269 <field id="MuDlight" description="Light limited growth rate for diatomes" unit="s-1" axis_ref="deptht" /> 270 <field id="LNnut" description="Nutrient limitation term in Nanophyto" unit="-" axis_ref="deptht" /> 271 <field id="LDnut" description="Nutrient limitation term in Diatoms" unit="-" axis_ref="deptht" /> 272 <field id="LNFe" description="Iron limitation term in Nanophyto" unit="-" axis_ref="deptht" /> 273 <field id="LDFe" description="Iron limitation term in Diatoms" unit="-" axis_ref="deptht" /> 274 <field id="LNlight" description="Light limitation term in Nanophyto" unit="-" axis_ref="deptht" /> 275 <field id="LDlight" description="Light limitation term in Diatoms" unit="-" axis_ref="deptht" /> 276 <field id="Nfix" description="Nitrogen fixation at surface" unit="mol/m2/s" /> 277 <field id="EPC100" description="Export of carbon particles at 100 m" unit="mol/m2/s" /> 278 <field id="EPFE100" description="Export of biogenic iron at 100 m" unit="mol/m2/s" /> 279 <field id="EPSI100" description="Export of Silicate at 100 m" unit="mol/m2/s" /> 280 <field id="EPCAL100" description="Export of Calcite at 100 m" unit="mol/m2/s" /> 281 <field id="Cflx" description="DIC flux" unit="mol/m2/s" /> 282 <field id="Oflx" description="Oxygen flux" unit="mol/m2/s" /> 283 <field id="Kg" description="Gas transfer" unit="mol/m2/s/uatm" /> 284 <field id="Dpco2" description="Delta CO2" unit="uatm" /> 285 <field id="Dpo2" description="Delta O2" unit="uatm" /> 286 <field id="Heup" description="Euphotic layer depth" unit="m" /> 287 <field id="Irondep" description="Iron deposition" unit="mol/m2/s" /> 277 288 </group> 278 289 … … 478 489 <field ref="PHY2" /> 479 490 <field ref="ZOO2" /> 480 <field ref=" BSi" />491 <field ref="DSi" /> 481 492 <field ref="Fer" /> 482 493 <field ref="BFe" /> … … 484 495 <field ref="SFe" /> 485 496 <field ref="DFe" /> 486 <field ref=" DSi" />497 <field ref="GSi" /> 487 498 <field ref="NFe" /> 488 499 <field ref="NCHL" /> … … 507 518 <field ref="DCAL" /> 508 519 <field ref="GRAZ" /> 520 <field ref="Mumax" /> 521 <field ref="MuN" /> 522 <field ref="MuD" /> 523 <field ref="MuNlight" /> 524 <field ref="MuDlight" /> 525 <field ref="LNnut" /> 526 <field ref="LDnut" /> 527 <field ref="LNFe" /> 528 <field ref="LDFe" /> 529 <field ref="LNlight" /> 530 <field ref="LDlight" /> 509 531 <field ref="EPC100" /> 510 532 <field ref="EPFE100" /> -
trunk/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_top
r3294 r3295 22 22 ln_trcdta = .true. ! Initialisation from data input file (T) or not (F) 23 23 ! 24 ! ! name ! title of the field ! units! initial data ! save !25 ! ! ! !! from file ! or not !26 ! ! ! !! or not ! !24 ! ! name ! title of the field ! initial data ! initial data ! save ! 25 ! ! ! ! units ! from file ! or not ! 26 ! ! ! ! ! or not ! ! 27 27 sn_tracer(1) = 'DIC ' , 'Dissolved inorganic Concentration ', 'mol-C/L' , .true. , .true. 28 28 sn_tracer(2) = 'Alkalini' , 'Total Alkalinity Concentration ', 'eq/L ' , .true. , .true. … … 37 37 sn_tracer(11) = 'PHY2 ' , 'Diatoms Concentration ', 'mol-C/L' , .false. , .true. 38 38 sn_tracer(12) = 'ZOO2 ' , 'Mesozooplankton Concentration ', 'mol-C/L' , .false. , .true. 39 sn_tracer(13) = ' BSi ' , 'Diatoms Silicate Concentration ', 'mol-C/L' , .false. , .true.39 sn_tracer(13) = 'DSi ' , 'Diatoms Silicate Concentration ', 'mol-C/L' , .false. , .true. 40 40 sn_tracer(14) = 'Fer ' , 'Dissolved Iron Concentration ', 'mol-C/L' , .true. , .true. 41 41 sn_tracer(15) = 'BFe ' , 'Big iron particles Concentration ', 'mol-C/L' , .false. , .true. … … 43 43 sn_tracer(17) = 'SFe ' , 'Small iron particles Concentration ', 'mol-C/L' , .false. , .true. 44 44 sn_tracer(18) = 'DFe ' , 'Diatoms iron Concentration ', 'mol-C/L' , .false. , .true. 45 sn_tracer(19) = ' DSi ' , 'Sinking biogenic Silicate Concentration', 'mol-C/L' , .false. , .true.45 sn_tracer(19) = 'GSi ' , 'Sinking biogenic Silicate Concentration', 'mol-C/L' , .false. , .true. 46 46 sn_tracer(20) = 'NFe ' , 'Nano iron Concentration ', 'mol-C/L' , .false. , .true. 47 47 sn_tracer(21) = 'NCHL ' , 'Nano chlorophyl Concentration ', 'mol-C/L' , .false. , .true. -
trunk/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/EXP00/iodef.xml
r2528 r3295 18 18 19 19 <group id="ptrc_T" axis_ref="deptht" grid_ref="grid_T"> 20 <field id="DIC" description="Dissolved inorganic Concentration" unit="m olC/L" />21 <field id="Alkalini" description="Total Alkalinity Concentration" unit=" eq/L" />22 <field id="O2" description="Oxygen Concentration" unit="m olO2/L" />23 <field id="CaCO3" description="Calcite Concentration" unit="m olC/L" />24 <field id="PO4" description="Phosphate Concentration" unit="m olC/L" />25 <field id="POC" description="Small organic carbon Concentration" unit="m olC/L" />26 <field id="Si" description="Silicate Concentration" unit="m olSi/L" />27 <field id="PHY" description="Nanophytoplankton Concentration" unit="m olC/L" />28 <field id="ZOO" description="Microzooplankton Concentration" unit="m olC/L" />29 <field id="DOC" description="Dissolved organic Concentration" unit="m olC/L" />30 <field id="PHY2" description="Diatoms Concentration" unit="m olC/L" />31 <field id="ZOO2" description="Mesozooplankton Concentration" unit="m olC/L" />32 <field id=" BSi" description="Diatoms Silicate Concentration" unit="molC/L" />33 <field id="Fer" description="Dissolved Iron Concentration" unit="m olFe/L" />34 <field id="BFe" description="Big iron particles Concentration" unit="m olFe/L" />35 <field id="GOC" description="Big organic carbon Concentration" unit="m olC/L" />36 <field id="SFe" description="Small iron particles Concentration" unit="m olFe/L" />37 <field id="DFe" description="Diatoms iron Concentration" unit="m olFe/L" />38 <field id=" DSi" description="Sinking biogenic Silicate Concentration" unit="molC/L" />39 <field id="NFe" description="Nano iron Concentration" unit="m olC/L" />40 <field id="NCHL" description="Nano chlorophyl Concentration" unit=" gChl/L" />41 <field id="DCHL" description="Diatoms chlorophyl Concentration" unit=" gChl/L" />42 <field id="NO3" description="Nitrates Concentration" unit="m olC/L" />43 <field id="NH4" description="Ammonium Concentration" unit="m olC/L" />20 <field id="DIC" description="Dissolved inorganic Concentration" unit="mmol/m3" /> 21 <field id="Alkalini" description="Total Alkalinity Concentration" unit="mmol/m3" /> 22 <field id="O2" description="Oxygen Concentration" unit="mmol/m3" /> 23 <field id="CaCO3" description="Calcite Concentration" unit="mmol/m3" /> 24 <field id="PO4" description="Phosphate Concentration" unit="mmol/m3" /> 25 <field id="POC" description="Small organic carbon Concentration" unit="mmol/m3" /> 26 <field id="Si" description="Silicate Concentration" unit="mmol/m3" /> 27 <field id="PHY" description="Nanophytoplankton Concentration" unit="mmol/m3" /> 28 <field id="ZOO" description="Microzooplankton Concentration" unit="mmol/m3" /> 29 <field id="DOC" description="Dissolved organic Concentration" unit="mmol/m3" /> 30 <field id="PHY2" description="Diatoms Concentration" unit="mmol/m3" /> 31 <field id="ZOO2" description="Mesozooplankton Concentration" unit="mmol/m3" /> 32 <field id="DSi" description="Diatoms Silicate Concentration" unit="mmol/m3" /> 33 <field id="Fer" description="Dissolved Iron Concentration" unit="mmol/m3" /> 34 <field id="BFe" description="Big iron particles Concentration" unit="mmol/m3" /> 35 <field id="GOC" description="Big organic carbon Concentration" unit="mmol/m3" /> 36 <field id="SFe" description="Small iron particles Concentration" unit="mmol/m3" /> 37 <field id="DFe" description="Diatoms iron Concentration" unit="mmol/m3" /> 38 <field id="GSi" description="Sinking biogenic Silicate Concentration" unit="mmol/m3" /> 39 <field id="NFe" description="Nano iron Concentration" unit="mmol/m3" /> 40 <field id="NCHL" description="Nano chlorophyl Concentration" unit="mg/m3" /> 41 <field id="DCHL" description="Diatoms chlorophyl Concentration" unit="mg/m3" /> 42 <field id="NO3" description="Nitrates Concentration" unit="mmol/m3" /> 43 <field id="NH4" description="Ammonium Concentration" unit="mmol/m3" /> 44 44 </group> 45 45 … … 47 47 48 48 <group id="diad_T" axis_ref="none" grid_ref="grid_T"> 49 <field id="PH" description="PH" unit="-" axis_ref="deptht" /> 50 <field id="CO3" description="Bicarbonates" unit="mol/L" axis_ref="deptht" /> 51 <field id="CO3sat" description="CO3 saturation" unit="mol/L" axis_ref="deptht" /> 52 <field id="PAR" description="Photosynthetically Available Radiation" unit="W/m2" axis_ref="deptht" /> 53 <field id="PPPHY" description="Primary production of nanophyto" unit="molC/m3/s" axis_ref="deptht" /> 54 <field id="PPPHY2" description="Primary production of diatoms" unit="molC/m3/s" axis_ref="deptht" /> 55 <field id="PPNEWN" description="New Primary production of nanophyto" unit="molC/m3/s" axis_ref="deptht" /> 56 <field id="PPNEWD" description="New Primary production of diatoms" unit="molC/m3/s" axis_ref="deptht" /> 57 <field id="PBSi" description="Primary production of Si diatoms" unit="molSi/m3/s" axis_ref="deptht" /> 58 <field id="PFeN" description="Primary production of nano iron" unit="molFe/m3/s" axis_ref="deptht" /> 59 <field id="PFeD" description="Primary production of diatoms iron" unit="molFe/m3/s" axis_ref="deptht" /> 60 <field id="PCAL" description="Calcite production" unit="molC/m3/s" axis_ref="deptht" /> 61 <field id="DCAL" description="Calcite dissolution" unit="molC/m3/s" axis_ref="deptht" /> 62 <field id="GRAZ" description="Grazing by zooplankton" unit="molC/m3/s" axis_ref="deptht" /> 63 <field id="Nfix" description="Nitrogen fixation at surface" unit="molN/m2/s" /> 64 <field id="EPC100" description="Export of carbon particles at 100 m" unit="molC/m2/s" /> 65 <field id="EPFE100" description="Export of biogenic iron at 100 m" unit="molFe/m2/s" /> 66 <field id="EPSI100" description="Export of Silicate at 100 m" unit="molSi/m2/s" /> 67 <field id="EPCAL100" description="Export of Calcite at 100 m" unit="molC/m2/s" /> 68 <field id="Cflx" description="DIC flux" unit="molC/m2/s" /> 69 <field id="Oflx" description="Oxygen flux" unit="molC/m2/s" /> 70 <field id="Kg" description="Gas transfer" unit="molC/m2/s/uatm" /> 71 <field id="Dpco2" description="Delta CO2" unit="uatm" /> 72 <field id="Dpo2" description="Delta O2" unit="uatm" /> 73 <field id="Heup" description="Euphotic layer depth" unit="m" /> 74 <field id="Irondep" description="Iron deposition" unit="molFe/m2/s" /> 75 </group> 49 <field id="PH" description="PH" unit="-" axis_ref="deptht" /> 50 <field id="CO3" description="Bicarbonates" unit="mol/m3" axis_ref="deptht" /> 51 <field id="CO3sat" description="CO3 saturation" unit="mol/m3" axis_ref="deptht" /> 52 <field id="PAR" description="Photosynthetically Available Radiation" unit="W/m2" axis_ref="deptht" /> 53 <field id="PPPHY" description="Primary production of nanophyto" unit="mol/m3/s" axis_ref="deptht" /> 54 <field id="PPPHY2" description="Primary production of diatoms" unit="mol/m3/s" axis_ref="deptht" /> 55 <field id="PPNEWN" description="New Primary production of nanophyto" unit="mol/m3/s" axis_ref="deptht" /> 56 <field id="PPNEWD" description="New Primary production of diatoms" unit="mol/m3/s" axis_ref="deptht" /> 57 <field id="PBSi" description="Primary production of Si diatoms" unit="mol/m3/s" axis_ref="deptht" /> 58 <field id="PFeN" description="Primary production of nano iron" unit="mol/m3/s" axis_ref="deptht" /> 59 <field id="PFeD" description="Primary production of diatoms iron" unit="mol/m3/s" axis_ref="deptht" /> 60 <field id="PCAL" description="Calcite production" unit="mol/m3/s" axis_ref="deptht" /> 61 <field id="DCAL" description="Calcite dissolution" unit="mol/m3/s" axis_ref="deptht" /> 62 <field id="GRAZ" description="Grazing by zooplankton" unit="mol/m3/s" axis_ref="deptht" /> 63 <field id="Mumax" description="Maximum growth rate" unit="s-1" axis_ref="deptht" /> 64 <field id="MuN" description="Realized growth rate for nanophyto" unit="s-1" axis_ref="deptht" /> 65 <field id="MuD" description="Realized growth rate for diatomes" unit="s-1" axis_ref="deptht" /> 66 <field id="MuNlight" description="Light limited growth rate for nanophyto" unit="s-1" axis_ref="deptht" /> 67 <field id="MuDlight" description="Light limited growth rate for diatomes" unit="s-1" axis_ref="deptht" /> 68 <field id="LNnut" description="Nutrient limitation term in Nanophyto" unit="-" axis_ref="deptht" /> 69 <field id="LDnut" description="Nutrient limitation term in Diatoms" unit="-" axis_ref="deptht" /> 70 <field id="LNFe" description="Iron limitation term in Nanophyto" unit="-" axis_ref="deptht" /> 71 <field id="LDFe" description="Iron limitation term in Diatoms" unit="-" axis_ref="deptht" /> 72 <field id="LNlight" description="Light limitation term in Nanophyto" unit="-" axis_ref="deptht" /> 73 <field id="LDlight" description="Light limitation term in Diatoms" unit="-" axis_ref="deptht" /> 74 <field id="Nfix" description="Nitrogen fixation at surface" unit="mol/m2/s" /> 75 <field id="EPC100" description="Export of carbon particles at 100 m" unit="mol/m2/s" /> 76 <field id="EPFE100" description="Export of biogenic iron at 100 m" unit="mol/m2/s" /> 77 <field id="EPSI100" description="Export of Silicate at 100 m" unit="mol/m2/s" /> 78 <field id="EPCAL100" description="Export of Calcite at 100 m" unit="mol/m2/s" /> 79 <field id="Cflx" description="DIC flux" unit="mol/m2/s" /> 80 <field id="Oflx" description="Oxygen flux" unit="mol/m2/s" /> 81 <field id="Kg" description="Gas transfer" unit="mol/m2/s/uatm" /> 82 <field id="Dpco2" description="Delta CO2" unit="uatm" /> 83 <field id="Dpo2" description="Delta O2" unit="uatm" /> 84 <field id="Heup" description="Euphotic layer depth" unit="m" /> 85 <field id="Irondep" description="Iron deposition" unit="mol/m2/s" /> 86 </group> 76 87 77 88 <!-- scalar --> … … 148 159 <field ref="PHY2" /> 149 160 <field ref="ZOO2" /> 150 <field ref=" BSi" />161 <field ref="DSi" /> 151 162 <field ref="Fer" /> 152 163 <field ref="BFe" /> … … 154 165 <field ref="SFe" /> 155 166 <field ref="DFe" /> 156 <field ref=" DSi" />167 <field ref="GSi" /> 157 168 <field ref="NFe" /> 158 169 <field ref="NCHL" /> … … 177 188 <field ref="DCAL" /> 178 189 <field ref="GRAZ" /> 190 <field ref="Mumax" /> 191 <field ref="MuN" /> 192 <field ref="MuD" /> 193 <field ref="MuNlight" /> 194 <field ref="MuDlight" /> 195 <field ref="LNnut" /> 196 <field ref="LDnut" /> 197 <field ref="LNFe" /> 198 <field ref="LDFe" /> 199 <field ref="LNlight" /> 200 <field ref="LDlight" /> 179 201 <field ref="EPC100" /> 180 202 <field ref="EPFE100" /> -
trunk/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/EXP00/namelist_top
r3294 r3295 22 22 ln_trcdta = .true. ! Initialisation from data input file (T) or not (F) 23 23 ! 24 ! ! name ! title of the field ! units! initial data ! save !25 ! ! ! !! from file ! or not !26 ! ! ! !! or not ! !24 ! ! name ! title of the field ! initial data ! initial data ! save ! 25 ! ! ! ! units ! from file ! or not ! 26 ! ! ! ! ! or not ! ! 27 27 sn_tracer(1) = 'DIC ' , 'Dissolved inorganic Concentration ', 'mol-C/L' , .true. , .true. 28 28 sn_tracer(2) = 'Alkalini' , 'Total Alkalinity Concentration ', 'eq/L ' , .true. , .true. … … 37 37 sn_tracer(11) = 'PHY2 ' , 'Diatoms Concentration ', 'mol-C/L' , .false. , .true. 38 38 sn_tracer(12) = 'ZOO2 ' , 'Mesozooplankton Concentration ', 'mol-C/L' , .false. , .true. 39 sn_tracer(13) = ' BSi ' , 'Diatoms Silicate Concentration ', 'mol-C/L' , .false. , .true.39 sn_tracer(13) = 'DSi ' , 'Diatoms Silicate Concentration ', 'mol-C/L' , .false. , .true. 40 40 sn_tracer(14) = 'Fer ' , 'Dissolved Iron Concentration ', 'mol-C/L' , .true. , .true. 41 41 sn_tracer(15) = 'BFe ' , 'Big iron particles Concentration ', 'mol-C/L' , .false. , .true. … … 43 43 sn_tracer(17) = 'SFe ' , 'Small iron particles Concentration ', 'mol-C/L' , .false. , .true. 44 44 sn_tracer(18) = 'DFe ' , 'Diatoms iron Concentration ', 'mol-C/L' , .false. , .true. 45 sn_tracer(19) = ' DSi ' , 'Sinking biogenic Silicate Concentration', 'mol-C/L' , .false. , .true.45 sn_tracer(19) = 'GSi ' , 'Sinking biogenic Silicate Concentration', 'mol-C/L' , .false. , .true. 46 46 sn_tracer(20) = 'NFe ' , 'Nano iron Concentration ', 'mol-C/L' , .false. , .true. 47 47 sn_tracer(21) = 'NCHL ' , 'Nano chlorophyl Concentration ', 'mol-C/L' , .false. , .true. -
trunk/NEMOGCM/CONFIG/cfg.txt
r3294 r3295 4 4 AMM12 OPA_SRC 5 5 ORCA2_LIM_PISCES OPA_SRC LIM_SRC_2 NST_SRC TOP_SRC 6 ORCA2_OFF_PISCES OPA_SRC OFF_SRC TOP_SRC7 6 AMM12_PISCES OPA_SRC TOP_SRC 8 7 ORCA2_LIM OPA_SRC LIM_SRC_2 NST_SRC 8 ORCA2_OFF_PISCES OPA_SRC OFF_SRC TOP_SRC -
trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/p4zlys.F90
r3294 r3295 150 150 IF( lk_iomput ) THEN 151 151 zrfact2 = 1.e3 * rfact2r 152 CALL iom_put( "PH" , hi (:,:,:) * tmask(:,:,:) )153 CALL iom_put( "CO3" , zco3 (:,:,:) * tmask(:,:,:) )154 CALL iom_put( "CO3sat", aksp (:,:,:) / calcon * tmask(:,:,:) )152 CALL iom_put( "PH" , hi (:,:,:) * tmask(:,:,:) ) 153 CALL iom_put( "CO3" , zco3 (:,:,:) * 1e+3 * tmask(:,:,:) ) 154 CALL iom_put( "CO3sat", aksp (:,:,:) * 1e+3 / calcon * tmask(:,:,:) ) 155 155 CALL iom_put( "DCAL" , zcaldiss(:,:,:) * zrfact2 * tmask(:,:,:) ) 156 156 ELSE -
trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/p4zmeso.F90
r3294 r3295 183 183 tra(ji,jj,jk,jpnch) = tra(ji,jj,jk,jpnch) - zgrazn * trn(ji,jj,jk,jpnch) / ( trn(ji,jj,jk,jpphy) + rtrn ) 184 184 tra(ji,jj,jk,jpdch) = tra(ji,jj,jk,jpdch) - zgrazd * trn(ji,jj,jk,jpdch) / ( trn(ji,jj,jk,jpdia) + rtrn ) 185 tra(ji,jj,jk,jp bsi) = tra(ji,jj,jk,jpbsi) - zgrazd * trn(ji,jj,jk,jpbsi) / ( trn(ji,jj,jk,jpdia) + rtrn )186 tra(ji,jj,jk,jp dsi) = tra(ji,jj,jk,jpdsi) + zgrazd * trn(ji,jj,jk,jpbsi) / ( trn(ji,jj,jk,jpdia) + rtrn )185 tra(ji,jj,jk,jpdsi) = tra(ji,jj,jk,jpdsi) - zgrazd * trn(ji,jj,jk,jpdsi) / ( trn(ji,jj,jk,jpdia) + rtrn ) 186 tra(ji,jj,jk,jpgsi) = tra(ji,jj,jk,jpgsi) + zgrazd * trn(ji,jj,jk,jpdsi) / ( trn(ji,jj,jk,jpdia) + rtrn ) 187 187 tra(ji,jj,jk,jpnfe) = tra(ji,jj,jk,jpnfe) - zgraznf 188 188 tra(ji,jj,jk,jpdfe) = tra(ji,jj,jk,jpdfe) - zgrazf -
trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/p4zmicro.F90
r3294 r3295 163 163 tra(ji,jj,jk,jpnch) = tra(ji,jj,jk,jpnch) - zgrazp * trn(ji,jj,jk,jpnch)/(trn(ji,jj,jk,jpphy)+rtrn) 164 164 tra(ji,jj,jk,jpdch) = tra(ji,jj,jk,jpdch) - zgrazsd * trn(ji,jj,jk,jpdch)/(trn(ji,jj,jk,jpdia)+rtrn) 165 tra(ji,jj,jk,jp bsi) = tra(ji,jj,jk,jpbsi) - zgrazsd * trn(ji,jj,jk,jpbsi)/(trn(ji,jj,jk,jpdia)+rtrn)166 tra(ji,jj,jk,jp dsi) = tra(ji,jj,jk,jpdsi) + zgrazsd * trn(ji,jj,jk,jpbsi)/(trn(ji,jj,jk,jpdia)+rtrn)165 tra(ji,jj,jk,jpdsi) = tra(ji,jj,jk,jpdsi) - zgrazsd * trn(ji,jj,jk,jpdsi)/(trn(ji,jj,jk,jpdia)+rtrn) 166 tra(ji,jj,jk,jpgsi) = tra(ji,jj,jk,jpgsi) + zgrazsd * trn(ji,jj,jk,jpdsi)/(trn(ji,jj,jk,jpdia)+rtrn) 167 167 tra(ji,jj,jk,jpnfe) = tra(ji,jj,jk,jpnfe) - zgrazpf 168 168 tra(ji,jj,jk,jpdfe) = tra(ji,jj,jk,jpdfe) - zgrazsf -
trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/p4zmort.F90
r3294 r3295 191 191 zfactch = trn(ji,jj,jk,jpdch) / ( trn(ji,jj,jk,jpdia) + rtrn ) 192 192 zfactfe = trn(ji,jj,jk,jpdfe) / ( trn(ji,jj,jk,jpdia) + rtrn ) 193 zfactsi = trn(ji,jj,jk,jp bsi) / ( trn(ji,jj,jk,jpdia) + rtrn )193 zfactsi = trn(ji,jj,jk,jpdsi) / ( trn(ji,jj,jk,jpdia) + rtrn ) 194 194 195 195 tra(ji,jj,jk,jpdia) = tra(ji,jj,jk,jpdia) - zmortp2 196 196 tra(ji,jj,jk,jpdch) = tra(ji,jj,jk,jpdch) - zmortp2 * zfactch 197 197 tra(ji,jj,jk,jpdfe) = tra(ji,jj,jk,jpdfe) - zmortp2 * zfactfe 198 tra(ji,jj,jk,jp bsi) = tra(ji,jj,jk,jpbsi) - zmortp2 * zfactsi199 tra(ji,jj,jk,jp dsi) = tra(ji,jj,jk,jpdsi) + zmortp2 * zfactsi198 tra(ji,jj,jk,jpdsi) = tra(ji,jj,jk,jpdsi) - zmortp2 * zfactsi 199 tra(ji,jj,jk,jpgsi) = tra(ji,jj,jk,jpgsi) + zmortp2 * zfactsi 200 200 #if defined key_kriest 201 201 tra(ji,jj,jk,jppoc) = tra(ji,jj,jk,jppoc) + zmortp2 -
trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/p4zprod.F90
r3294 r3295 388 388 tra(ji,jj,jk,jpdch) = tra(ji,jj,jk,jpdch) + zprochld(ji,jj,jk) * texcret2 389 389 tra(ji,jj,jk,jpdfe) = tra(ji,jj,jk,jpdfe) + zprofed(ji,jj,jk) * texcret2 390 tra(ji,jj,jk,jp bsi) = tra(ji,jj,jk,jpbsi) + zprorcad(ji,jj,jk) * zysopt(ji,jj,jk) * texcret2390 tra(ji,jj,jk,jpdsi) = tra(ji,jj,jk,jpdsi) + zprorcad(ji,jj,jk) * zysopt(ji,jj,jk) * texcret2 391 391 tra(ji,jj,jk,jpdoc) = tra(ji,jj,jk,jpdoc) + excret2 * zprorcad(ji,jj,jk) + excret * zprorca(ji,jj,jk) 392 392 tra(ji,jj,jk,jpoxy) = tra(ji,jj,jk,jpoxy) + o2ut * ( zproreg + zproreg2) & … … 412 412 IF( ln_diatrc ) THEN 413 413 ! 414 zrfact2 = 1.e3 * rfact2r 414 zrfact2 = 1.e3 * rfact2r ! conversion from mol/L/timestep into mol/m3/s 415 415 IF( lk_iomput ) THEN 416 416 IF( jnt == nrdttrc ) THEN 417 CALL iom_put( "PPPHY" , zprorca (:,:,:) * zrfact2 * tmask(:,:,:) ) ! primary production by nanophyto 418 CALL iom_put( "PPPHY2", zprorcad(:,:,:) * zrfact2 * tmask(:,:,:) ) ! primary production by diatom 419 CALL iom_put( "PPNEWN", zpronew (:,:,:) * zrfact2 * tmask(:,:,:) ) ! new primary production by nanophyto 420 CALL iom_put( "PPNEWD", zpronewd(:,:,:) * zrfact2 * tmask(:,:,:) ) ! new primary production by diatom 421 CALL iom_put( "PBSi" , zprorcad(:,:,:) * zrfact2 * tmask(:,:,:) * zysopt(:,:,:) ) ! biogenic silica production 422 CALL iom_put( "PFeD" , zprofed (:,:,:) * zrfact2 * tmask(:,:,:) ) ! biogenic iron production by diatom 423 CALL iom_put( "PFeN" , zprofen (:,:,:) * zrfact2 * tmask(:,:,:) ) ! biogenic iron production by nanophyto 417 CALL iom_put( "PPPHY" , zprorca (:,:,:) * zrfact2 * tmask(:,:,:) ) ! primary production by nanophyto 418 CALL iom_put( "PPPHY2" , zprorcad(:,:,:) * zrfact2 * tmask(:,:,:) ) ! primary production by diatom 419 CALL iom_put( "PPNEWN" , zpronew (:,:,:) * zrfact2 * tmask(:,:,:) ) ! new primary production by nanophyto 420 CALL iom_put( "PPNEWD" , zpronewd(:,:,:) * zrfact2 * tmask(:,:,:) ) ! new primary production by diatom 421 CALL iom_put( "PBSi" , zprorcad(:,:,:) * zrfact2 * tmask(:,:,:) * zysopt(:,:,:) ) ! biogenic silica production 422 CALL iom_put( "PFeD" , zprofed (:,:,:) * zrfact2 * tmask(:,:,:) ) ! biogenic iron production by diatom 423 CALL iom_put( "PFeN" , zprofen (:,:,:) * zrfact2 * tmask(:,:,:) ) ! biogenic iron production by nanophyto 424 CALL iom_put( "Mumax" , prmax (:,:,:) * tmask(:,:,:) ) ! Maximum growth rate 425 CALL iom_put( "MuN" , zprbio (:,:,:) * xlimphy(:,:,:) * tmask(:,:,:) ) ! Realized growth rate for nanophyto 426 CALL iom_put( "MuD" , zprdia (:,:,:) * xlimdia(:,:,:) * tmask(:,:,:) ) ! Realized growth rate for diatoms 427 CALL iom_put( "MuNlight", zprbio (:,:,:) * tmask(:,:,:) ) ! Light limited growth rate phytoplankton 428 CALL iom_put( "MuDlight", zprdia (:,:,:) * tmask(:,:,:) ) ! Light limited growth rate diatoms 429 CALL iom_put( "LNnut" , xlimphy (:,:,:) * tmask(:,:,:) ) ! Nutrient limitation term 430 CALL iom_put( "LDnut" , xlimdia (:,:,:) * tmask(:,:,:) ) ! Nutrient limitation term 431 CALL iom_put( "LNFe" , xlimnfe (:,:,:) * tmask(:,:,:) ) ! Iron limitation term 432 CALL iom_put( "LDFe" , xlimdfe (:,:,:) * tmask(:,:,:) ) ! Iron limitation term 433 CALL iom_put( "LNlight" , zprbio (:,:,:) / (prmax(:,:,:) + rtrn) * tmask(:,:,:) ) ! light limitation term 434 CALL iom_put( "LDlight" , zprdia (:,:,:) / (prmax(:,:,:) + rtrn) * tmask(:,:,:) ) ! light limitation term 424 435 ENDIF 425 436 ELSE -
trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/p4zrem.F90
r3294 r3295 281 281 zfactdep = xsilab * EXP(-( xsiremlab - xsirem ) * zdep / wsbio2 ) 282 282 zsiremin = ( xsiremlab * zfactdep + xsirem * ( 1. - zfactdep ) ) * zstep * znusil 283 zosil = zsiremin * trn(ji,jj,jk,jp dsi)283 zosil = zsiremin * trn(ji,jj,jk,jpgsi) 284 284 ! 285 tra(ji,jj,jk,jp dsi) = tra(ji,jj,jk,jpdsi) - zosil285 tra(ji,jj,jk,jpgsi) = tra(ji,jj,jk,jpgsi) - zosil 286 286 tra(ji,jj,jk,jpsil) = tra(ji,jj,jk,jpsil) + zosil 287 287 ! … … 312 312 #if defined key_kriest 313 313 zdenom1 = trn(ji,jj,jk,jppoc) / & 314 & ( trn(ji,jj,jk,jppoc) + trn(ji,jj,jk,jp dsi) + trn(ji,jj,jk,jpcal) + rtrn )315 #else 316 zdenom = 1. / ( trn(ji,jj,jk,jppoc) + trn(ji,jj,jk,jpgoc) + trn(ji,jj,jk,jp dsi) + trn(ji,jj,jk,jpcal) + rtrn )314 & ( trn(ji,jj,jk,jppoc) + trn(ji,jj,jk,jpgsi) + trn(ji,jj,jk,jpcal) + rtrn ) 315 #else 316 zdenom = 1. / ( trn(ji,jj,jk,jppoc) + trn(ji,jj,jk,jpgoc) + trn(ji,jj,jk,jpgsi) + trn(ji,jj,jk,jpcal) + rtrn ) 317 317 zdenom1 = trn(ji,jj,jk,jppoc) * zdenom 318 318 zdenom2 = trn(ji,jj,jk,jpgoc) * zdenom … … 328 328 #if defined key_kriest 329 329 zlam1b = 3.e-5 + xlam1 * ( trn(ji,jj,jk,jppoc) & 330 & + trn(ji,jj,jk,jpcal) + trn(ji,jj,jk,jp dsi) ) * 1.e6330 & + trn(ji,jj,jk,jpcal) + trn(ji,jj,jk,jpgsi) ) * 1.e6 331 331 #else 332 332 zlam1b = 3.e-5 + xlam1 * ( trn(ji,jj,jk,jppoc) + trn(ji,jj,jk,jpgoc) & 333 & + trn(ji,jj,jk,jpcal) + trn(ji,jj,jk,jp dsi) ) * 1.e6333 & + trn(ji,jj,jk,jpcal) + trn(ji,jj,jk,jpgsi) ) * 1.e6 334 334 #endif 335 335 zscave = zfeequi * zlam1b * zstep -
trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/p4zsed.F90
r3294 r3295 160 160 ikt = mbkt(ji,jj) 161 161 # if defined key_kriest 162 zwork1(ji,jj) = trn(ji,jj,ikt,jp dsi) * wscal (ji,jj,ikt)162 zwork1(ji,jj) = trn(ji,jj,ikt,jpgsi) * wscal (ji,jj,ikt) 163 163 zwork2(ji,jj) = trn(ji,jj,ikt,jppoc) * wsbio3(ji,jj,ikt) 164 164 # else 165 zwork1(ji,jj) = trn(ji,jj,ikt,jp dsi) * wsbio4(ji,jj,ikt)165 zwork1(ji,jj) = trn(ji,jj,ikt,jpgsi) * wsbio4(ji,jj,ikt) 166 166 zwork2(ji,jj) = trn(ji,jj,ikt,jpgoc) * wsbio4(ji,jj,ikt) + trn(ji,jj,ikt,jppoc) * wsbio3(ji,jj,ikt) 167 167 # endif … … 194 194 zwscal = wscal (ji,jj,ikt) * zdep 195 195 # if defined key_kriest 196 zsiloss = trn(ji,jj,ikt,jp dsi) * zwsbio4196 zsiloss = trn(ji,jj,ikt,jpgsi) * zwsbio4 197 197 # else 198 zsiloss = trn(ji,jj,ikt,jp dsi) * zwscal198 zsiloss = trn(ji,jj,ikt,jpgsi) * zwscal 199 199 # endif 200 200 zcaloss = trn(ji,jj,ikt,jpcal) * zwscal 201 201 ! 202 trn(ji,jj,ikt,jp dsi) = trn(ji,jj,ikt,jpdsi) - zsiloss202 trn(ji,jj,ikt,jpgsi) = trn(ji,jj,ikt,jpgsi) - zsiloss 203 203 trn(ji,jj,ikt,jpcal) = trn(ji,jj,ikt,jpcal) - zcaloss 204 204 #if ! defined key_sed -
trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/p4zsink.F90
r3294 r3295 156 156 CALL p4z_sink2( wsbio4, sinking2, jpnum ) 157 157 CALL p4z_sink2( wsbio3, sinkfer , jpsfe ) 158 CALL p4z_sink2( wscal , sinksil , jp dsi )158 CALL p4z_sink2( wscal , sinksil , jpgsi ) 159 159 CALL p4z_sink2( wscal , sinkcal , jpcal ) 160 160 … … 512 512 CALL p4z_sink2( wsbio4, sinking2, jpgoc ) 513 513 CALL p4z_sink2( wsbio4, sinkfer2, jpbfe ) 514 CALL p4z_sink2( wsbio4, sinksil , jp dsi )514 CALL p4z_sink2( wsbio4, sinksil , jpgsi ) 515 515 CALL p4z_sink2( wscal , sinkcal , jpcal ) 516 516 -
trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/par_pisces.F90
r3294 r3295 48 48 INTEGER, PUBLIC, PARAMETER :: jpdia = jp_lp + 11 !: Diatoms Concentration 49 49 INTEGER, PUBLIC, PARAMETER :: jpmes = jp_lp + 12 !: Mesozooplankton Concentration 50 INTEGER, PUBLIC, PARAMETER :: jp bsi = jp_lp + 13 !: (big) Silicate Concentration50 INTEGER, PUBLIC, PARAMETER :: jpdsi = jp_lp + 13 !: (big) Silicate Concentration 51 51 INTEGER, PUBLIC, PARAMETER :: jpfer = jp_lp + 14 !: Iron Concentration 52 52 INTEGER, PUBLIC, PARAMETER :: jpnum = jp_lp + 15 !: Big iron particles Concentration 53 53 INTEGER, PUBLIC, PARAMETER :: jpsfe = jp_lp + 16 !: number of particulate organic phosphate concentration 54 54 INTEGER, PUBLIC, PARAMETER :: jpdfe = jp_lp + 17 !: Diatoms iron Concentration 55 INTEGER, PUBLIC, PARAMETER :: jp dsi = jp_lp + 18 !: Diatoms Silicate Concentration55 INTEGER, PUBLIC, PARAMETER :: jpgsi = jp_lp + 18 !: Diatoms Silicate Concentration 56 56 INTEGER, PUBLIC, PARAMETER :: jpnfe = jp_lp + 19 !: Nano iron Concentration 57 57 INTEGER, PUBLIC, PARAMETER :: jpnch = jp_lp + 20 !: Nano Chlorophyll Concentration … … 86 86 INTEGER, PUBLIC, PARAMETER :: jpdia = jp_lp + 11 !: Diatoms Concentration 87 87 INTEGER, PUBLIC, PARAMETER :: jpmes = jp_lp + 12 !: Mesozooplankton Concentration 88 INTEGER, PUBLIC, PARAMETER :: jp bsi = jp_lp + 13 !: (big) Silicate Concentration88 INTEGER, PUBLIC, PARAMETER :: jpdsi = jp_lp + 13 !: (big) Silicate Concentration 89 89 INTEGER, PUBLIC, PARAMETER :: jpfer = jp_lp + 14 !: Iron Concentration 90 90 INTEGER, PUBLIC, PARAMETER :: jpbfe = jp_lp + 15 !: Big iron particles Concentration … … 92 92 INTEGER, PUBLIC, PARAMETER :: jpsfe = jp_lp + 17 !: Small iron particles Concentration 93 93 INTEGER, PUBLIC, PARAMETER :: jpdfe = jp_lp + 18 !: Diatoms iron Concentration 94 INTEGER, PUBLIC, PARAMETER :: jp dsi = jp_lp + 19 !: Diatoms Silicate Concentration94 INTEGER, PUBLIC, PARAMETER :: jpgsi = jp_lp + 19 !: Diatoms Silicate Concentration 95 95 INTEGER, PUBLIC, PARAMETER :: jpnfe = jp_lp + 20 !: Nano iron Concentration 96 96 INTEGER, PUBLIC, PARAMETER :: jpnch = jp_lp + 21 !: Nano Chlorophyll Concentration -
trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/trcini_pisces.F90
r3294 r3295 112 112 # endif 113 113 trn(:,:,:,jpsil) = silic1 114 trn(:,:,:,jp bsi) = bioma0 * 0.15115 trn(:,:,:,jp dsi) = bioma0 * 5.e-6114 trn(:,:,:,jpdsi) = bioma0 * 0.15 115 trn(:,:,:,jpgsi) = bioma0 * 5.e-6 116 116 trn(:,:,:,jpphy) = bioma0 117 117 trn(:,:,:,jpdia) = bioma0 -
trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/trcsms_pisces.F90
r3294 r3295 207 207 & + trn(:,:,:,jpdoc) ) * cvol(:,:,:) ) 208 208 ! 209 zsilbudget = glob_sum( ( trn(:,:,:,jpsil) + trn(:,:,:,jp dsi) &210 & + trn(:,:,:,jp bsi) ) * cvol(:,:,:) )209 zsilbudget = glob_sum( ( trn(:,:,:,jpsil) + trn(:,:,:,jpgsi) & 210 & + trn(:,:,:,jpdsi) ) * cvol(:,:,:) ) 211 211 ! 212 212 zalkbudget = glob_sum( ( trn(:,:,:,jpno3) * rno3 & -
trunk/NEMOGCM/NEMO/TOP_SRC/trcwri.F90
r3294 r3295 17 17 USE iom ! I/O manager 18 18 USE dianam ! Output file name 19 USE trcwri_pisces 19 20 20 21 IMPLICIT NONE … … 68 69 ! write the tracer concentrations in the file 69 70 ! --------------------------------------- 70 DO jn = 1, jptra 71 cltra = TRIM( ctrcnm(jn) ) ! short title for tracer 72 CALL iom_put( cltra, trn(:,:,:,jn) ) 73 END DO 71 IF( lk_pisces ) THEN 72 CALL trc_wri_pisces 73 ELSE 74 DO jn = 1, jptra 75 cltra = TRIM( ctrcnm(jn) ) ! short title for tracer 76 CALL iom_put( cltra, trn(:,:,:,jn) ) 77 END DO 78 ENDIF 74 79 ! 75 80 END SUBROUTINE trc_wri_trc
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