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2017-09-06:

19:02 Changeset [8505] by clem

changes in style - part5 - start changing init routines

17:47 Changeset [8504] by clem

changes in style - part4 - clarify ice advection routines

15:05 Changeset [8503] by jcastill

Print namsbc_flx namelist information in the output (shelf seas configuration)

13:05 Changeset [8502] by jcastill

Bug fix - one variable was calculated using the wrong component

12:56 Changeset [8501] by dford

Add omitted do loop and divide-by-zero check.

12:01 Changeset [8500] by clem

changes in style - part3 - move output into proper files and correct a bug in debug mode

10:33 Changeset [8499] by jcastill

Remove because it was created by mistake

2017-09-05:

19:53 Changeset [8498] by clem

changes in style - part2 -

18:00 Changeset [8497] by dford

Include conversion from moles to grams in carbon to chlorophyll ratio calculation.

15:30 user/nicolasmartin/Bibliography Building edited by nicolasmartin
(diff)
15:03 Changeset [8496] by clem

debug icevar

14:34 2017WP/AGRIF-2_Tim Graham-vertical edited by timgraham
(diff)
14:02 Users/Reference Configurations/ORCA2_LIM3_PISCES edited by clevy
(diff)

2017-09-04:

18:50 Changeset [8495] by dford

Merge in changes from dev_r5518_GO6_package_asm_surf_bgc, and adapt to the updated MEDUSA structure.

15:59 Users/Model Interfacing/Inputs Outputs edited by clevy
(diff)
14:25 Changeset [8494] by dford

New branch off head of GO6 package branch for MEDUSA assimilation changes.

13:10 Users/Model Interfacing/Inputs Outputs edited by clevy
(diff)
13:06 Users/Model Install edited by clevy
(diff)
12:59 New reply on Beginner created by clevy
[XIOS] First run nemo XIOS2.0 'attribute_map.cpp'
12:13 New reply on Interfaces created by clevy
[IO] Access to NEMO outputs
09:48 Changeset [8493] by frrh

Remove defunct development/test branch.

09:46 Changeset [8492] by frrh

Remove defunct development branch.

2017-09-01:

18:15 Changeset [8491] by clem

debug icevar.F90

17:28 Changeset [8490] by jpalmier

JPALM — mld chl — remove quick and dirty hacks

16:55 Changeset [8489] by jpalmier

JPALM — gmed ticket #346 : improve MEDUSA conservation — import BBL bug fix from NEMO ticket #1932 to GO6 branch

16:47 Changeset [8488] by clem

compilation bugs

16:35 Changeset [8487] by jpalmier

JPALM — gmed ticket #346 — branch creation

15:49 Changeset [8486] by clem

changes in style - part1 - (now the code looks better txs to Gurvan's comments)

15:12 Changeset [8485] by dford

Mask logchl increments in the ITF region.

12:17 Changeset [8484] by jamrae

Added write statements for debugging.

12:03 Changeset [8483] by clem

bug fix following #1937

12:02 Changeset [8482] by clem

bug fix following #1937

12:02 Changeset [8481] by clem

bug fix following #1937

12:02 Changeset [8480] by clem

bug fix following #1937

12:01 Ticket #1937 (wrong heat budget of the leads in LIM3) created by clem
This ticket applies to the trunk and different development branches (i.e. …

2017-08-31:

19:44 Changeset [8479] by jpalmier

JPALM — trdtrc — polish field_def_bgc

17:22 Changeset [8478] by jamrae

Added call to cice2nemo for roughness length in cice_sbc_init.

14:41 Changeset [8477] by timgraham

Revert accidental change to step.F90 in last commit

14:33 Changeset [8476] by davestorkey

UKMO/dev_3.6_FVPS : implement FVPS HPG scheme.

14:15 Changeset [8475] by jpalmier

JPALM — trdtrc —add vertical integrated trends

2017-08-30:

15:08 Changeset [8474] by dford

Add fields required for logchl assimilation to restart.

11:42 Ticket #1935 (Kinetic Energy calculation is wrong) closed by timgraham
fixed: Sorry about that. Now fixed at r8473
11:38 Changeset [8473] by timgraham

Corrected fix for #1935 (not using variables that don't exist in nemo_v3_6_stable)

11:23 Ticket #1935 (Kinetic Energy calculation is wrong) reopened by arsouze
It looks like variables r1_e1e2t, e1e2u, e1e2v are not defined in …

2017-08-29:

18:20 Changeset [8472] by jpalmier

JPALM — #1933 — typo error

18:12 Changeset [8471] by jpalmier

JPALM — #1933 — add and correct passive tracer trends - needs improvements and testing

16:18 Changeset [8470] by jpalmier

JPALM — 29-08-2017 — trends bug fix TOT, ZDF, ZDP

2017-08-28:

16:42 Changeset [8469] by flavoni

#1936: add missing BATCH file

16:36 Ticket #1936 (missing test in SETTE for SAS restart_ice files) closed by flavoni
fixed
16:32 Changeset [8468] by flavoni

#1936: add in sette_rpt.sh difference of SAS restart_ice files

16:28 Ticket #1936 (missing test in SETTE for SAS restart_ice files) created by flavoni
= Analysis For developers : In SETTE tests is missing a test to evaluate …

2017-08-25:

18:56 Changeset [8467] by jpalmier

JPALM — 25-08-2017 — improve trdtrc debug print statements

16:10 Changeset [8466] by dford

Set QC value so fill values don't get assimilated.

10:47 New topic on Forks created by pderian
[Dev] NEMO + Docker for easy set-up
10:36 Ticket #1934 (Bug in diawri.F90:dia_wri() for kinetic energy (eken)) closed by timgraham
fixed: Fixed at r8464 of nemo_v3_6_stable and r8465 in the trunk along with …
10:35 Ticket #1935 (Kinetic Energy calculation is wrong) closed by timgraham
fixed: Fixed at r8464 of nemo_v3_6_stable and r8465 in the trunk
10:34 Changeset [8465] by timgraham

#1934 and #1935 - correct calculation of KE in diawri.F90

10:31 Changeset [8464] by timgraham

#1934 and #1935 - correct KE calculation in diawri.F90

2017-08-24:

19:05 Changeset [8463] by jpalmier

JPALM - trdtrc - fixes, update field_def

16:35 Ticket #1935 (Kinetic Energy calculation is wrong) created by timgraham
= Context The calculation of KE in diawri.F90 is not correct. Also note …
15:51 Ticket #1934 (Bug in diawri.F90:dia_wri() for kinetic energy (eken)) created by pderian
= Context Experienced "Segmentation fault - invalid memory reference" …
13:02 Changeset [8462] by dford

Mask land if initialising pCO2/fCO2.

2017-08-23:

18:52 Changeset [8461] by jpalmier

correct trdtrc ticket #1933

18:43 Ticket #1933 (passive tracers trends) created by jpalmier
= Context Working with the UKMO version of NEMO, i got some …
18:23 Changeset [8460] by jamrae

Moved lines setting up ssnd(jps_fmdice), as they were in the wrong place.

17:53 Changeset [8459] by jamrae

Outputs for debugging.

17:07 Changeset [8458] by jamrae

Write statements for debugging.

15:27 Changeset [8457] by dford

Option to read in a value for atmospheric xCO2.

14:20 Changeset [8456] by dford

Add pCO2/fCO2 assimilation.

12:57 Changeset [8455] by dford

Update getting chlorophyll, pCO2 and fCO2 from MEDUSA.

12:53 Changeset [8454] by dford

Branch to update logchl and fco2 obs operator for use with GO6-MEDUSA.

2017-08-22:

18:54 Changeset [8453] by jpalmier

JPALM —22-08-2017— repair trends for passive tracers

14:36 Changeset [8452] by frrh

Lock files

13:19 Changeset [8451] by jpalmier

create branch to correct the passive tracer trends

11:34 Changeset [8450] by frrh

Test locking processes for prevention of rogue commits.

2017-08-21:

16:33 Changeset [8449] by jamrae

Added some write statements for debugging.

15:06 Changeset [8448] by jamrae

Changes to NEMO coupling for form drag field.

12:01 New topic on Beginner created by wanghaoyun0831
[XIOS] First run nemo XIOS2.0 'attribute_map.cpp'

2017-08-18:

20:34 user/flavoni/libIGCM_v4.0a edited by nicolasmartin
(diff)
18:16 Changeset [8447] by anaguiar

Merging with the dev_r5518_pcbias_ipc@8446 branch

17:08 Changeset [8446] by anaguiar

More changes to avoid conflict merge

17:01 Changeset [8445] by anaguiar

Further changes to solve conflict merges with package branch

16:35 Changeset [8444] by anaguiar

Changes to avoid merge conflicts with package branch

2017-08-17:

16:24 Changeset [8443] by frrh

Delete defunct development branch

13:39 Changeset [8442] by frrh

Commit changes relating to Met Office GMED ticket 340 for the
tidying of MEDUSA related code and debugging statements in the TOP code.

Only code introduced at revision 8434 of branch
http://fcm3/projects/NEMO.xm/log/branches/NERC/dev_r5518_GO6_split_trcbiomedusa
is included here, all previous revisions of that branch having been dealt with
under GMED ticket 339.

11:13 Changeset [8441] by frrh

Commit changes relating to Met Office GMED ticket 339 for the modularisation of
of trcbio_medusa.F90.

Branch http://fcm3/projects/NEMO.xm/log/branches/NERC/dev_r5518_GO6_split_trcbiomedusa
from revisions 8394 to 8423 inclusive refer.

2017-08-16:

15:21 Ticket #1932 (trabbl not conserving tracers at the north-fold) created by acc
= Context v3.6_STABLE (and probably trunk, though not tested for trunk …
14:47 Changeset [8440] by dford

Add more variables to assimilation background, so it includes all required elements of the background state.

12:18 New reply on Tools created by jchanut
[CDF-tools] Z-coordinate output from s-coordinate grid
09:28 New reply on Beginner created by mlicer
[ref-cfg] "recipe for target 'lib_cray.f90' failed"

2017-08-15:

12:22 Changeset [8439] by dancopsey

Add n_rivers as a parameter.

12:21 Changeset [8438] by dford

Initial implementation of Jozef S's code to do multivariate balancing with ERSEM.

06:27 New topic on Forks created by dessyberlianty
[usp-cfg] Compilation of ORCA2_LIM_PISCES using key_agrif

2017-08-14:

16:33 Changeset [8437] by dancopsey

Put number of rivers into partition definition. Only output final river outflow on processor 1.

15:22 Changeset [8436] by dford

Implement initial version of surface chlorophyll assimilation for MEDUSA.

12:19 Changeset [8435] by isabella

Added changes after review.

2017-08-11:

15:13 New reply on Beginner created by nicolasmartin
[ref-cfg] "recipe for target 'lib_cray.f90' failed"
12:47 Changeset [8434] by jpalmier

JPALM — 11-08-2017 — MEDUSA cleaned and purged

09:37 New reply on Beginner created by mlicer
[ref-cfg] "recipe for target 'lib_cray.f90' failed"

2017-08-10:

17:33 Changeset [8433] by dancopsey

Added partition information for river runoff coupling.

12:16 Changeset [8432] by dford

Clear svn keywords.

12:14 Changeset [8431] by dford

Branch of UKMO ASM code to include logchl balancing for ERSEM.

11:31 Changeset [8430] by dford

Add a couple of declarations which got omitted in previous merge.

10:57 New reply on Beginner created by mlicer
[ref-cfg] "recipe for target 'lib_cray.f90' failed"

2017-08-09:

17:27 Documentation edited by nicolasmartin
(diff)
15:55 Changeset [8429] by frrh

Deleting development branch now that it has been committed to GO6 package branch.

14:56 Changeset [8428] by dford

Add logchl assimilation, with nitrogen balancing for HadOCC.

12:13 Changeset [8427] by timgraham

GMED ticket 341. Fixes found through use of preset Na Ns? to make the code more robust.

2017-08-08:

17:53 Changeset [8426] by clem

last routine names to be changed

17:27 New reply on Beginner created by nicolasmartin
[ref-cfg] "recipe for target 'lib_cray.f90' failed"
16:57 Changeset [8425] by jcastill

Calculate wind velocity relative to currents if needed for flux forcing in shelf seas configuration

16:18 Changeset [8424] by clem

continue naming

16:15 Ticket #1931 (Double entries in SHARED/namelist_ref) closed by flavoni
fixed: fix in revision 8421
16:14 Changeset [8423] by jpalmier

JPALM — 08-08-2017 — add conservation test - correct MEDUSA jn loop

15:58 Changeset [8422] by clem

continue naming

15:50 Changeset [8421] by flavoni

fix ticket #1931 for 3_6_STABLE

14:18 Changeset [8420] by clem

changing names

14:11 Changeset [8419] by jpalmier

JPALM — 08-08-2017 — clean trcbio_medusa split only - running this time

13:19 Changeset [8418] by mattmartin

Updated branch of GO6 package branch to enable averaging the assimilation background file.

13:14 Changeset [8417] by mattmartin

Create a branch for averaging the assimilation background used for background error parameterisations

13:10 Changeset [8416] by jcastill

Add the possibility of using wind velocity relative to currents when using flux forcing in shelf seas configuration

12:54 Changeset [8415] by jcastill

Calculate wind velocity relative to currents if needed for flux forcing in shelf seas configuration

12:48 Changeset [8414] by clem

changing names

10:41 Scientific Advisory Board/Agenda/2017-06-27 edited by clevy
(diff)
10:40 Wave_WG_201706_DevCom.pptx attached to Scientific Advisory Board/Agenda/2017-06-27 by clevy

2017-08-07:

19:05 Changeset [8413] by clem

continue changing names (again)

18:23 Users/Model Interfacing/Inputs Outputs edited by nicolasmartin
(diff)
18:22 Users/Model Interfacing/Inputs Outputs edited by nicolasmartin
(diff)
18:15 New reply on Beginner created by nicolasmartin
[XIOS] Error "xios-1.0/src/node/axis.cpp' → The bounds array of the axis [ id = 'deptht' , context = 'nemo' ] must be of dimension axis 2 x size"
18:11 Changeset [8412] by jcastill

Minor modification to avoid merging problems

18:09 Changeset [8411] by clem

continue changing names

18:04 Glossary edited by nicolasmartin
(diff)
17:43 Changeset [8410] by clem

correction on the last commit

17:29 Changeset [8409] by clem

change calls in icestp.F90 for advection

16:52 Changeset [8408] by jcastill

Remove the code that does not belong to this branch, and that is already included in the amm15 configuration branch AMM15_v3_6_STABLE_package

16:45 Changeset [8407] by clem

change calls in icestp.F90 for rheology

16:38 Changeset [8406] by dford

Branch to add assimilation of surface ocean colour and fCO2 to GO6-MEDUSA. See GMED ticket 344.

16:03 New topic on Beginner created by larsbuntemeyer
[XIOS] Error "xios-1.0/src/node/axis.cpp' → The bounds array of the axis [ id = 'deptht' , context = 'nemo' ] must be of dimension axis 2 x size"
15:26 Changeset [8405] by dford

Update trend diagnostics in field_def_ptracer.xml.

15:05 Changeset [8404] by clem

start changing calls in icestp.F90

14:44 Ticket #1931 (Double entries in SHARED/namelist_ref) created by mscheinert
= Context In section &namobs in CONFIG/SHARED/namelist_ref the …
13:44 New reply on Beginner created by mlicer
[ref-cfg] "recipe for target 'lib_cray.f90' failed"
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