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2018-04-19:

18:19 Changeset [9488] by jpalmier

start with hard coded under-ice relax value

17:34 Changeset [9487] by jpalmier

create branch

2018-04-17:

16:46 Changeset [9486] by kingr

Minor bugfix to allow code to build w/o key_asminc.

2018-04-14:

13:18 Changeset [9485] by clem

make sure that the double zoom configuration agrif_nordic is restartable. One must have moved the call to sea ice update at the end of step (after integrate_childgrids)

2018-04-13:

22:06 Changeset [9484] by clem

simplify namelists

20:19 Changeset [9483] by clem

add agrif nordic configuration to sette tests. I just noticed that one zoom config is restartable but not the double zoom config…ongoing

19:03 Changeset [9482] by clem

The configuration Agrif_Nordic is now restartable for any nn_fsbc(Parent) and nn_fsbc(Child). However we do not authorized nn_fsbc(Child) to be larger than 1 because otherwise it breaks the CFL too easily. The simulation would still run but the results would not be satisfactory. I still have to verify this point with the last version of the code

16:53 Changeset [9481] by nicolasmartin

Insert full text copy of CECILL V2 license (2006-09-05) as stated in NEMO Consortium Agreement in LICENSE file at root

16:40 Changeset [9480] by cbricaud

modify SETTE for new MERCATOR cluster ( KARA )

16:30 Changeset [9479] by nicolasmartin

Finally found a better solution by combining with CSS rule

15:41 Changeset [9478] by nicolasmartin

Should have found the right directive for ASCII code block

15:12 Changeset [9477] by nicolasmartin

After modifying Trac configuration, README should be rendered as rst without specifying MIME property

13:51 Changeset [9476] by nicolasmartin

Integrate ASCII image as literal block for rendering

13:47 Changeset [9475] by nicolasmartin

Add ASCII art image to README

2018-04-12:

18:14 Changeset [9474] by deazer

25h mean bugfix needed for midnight crossover

18:12 Changeset [9473] by deazer

Bug fix for 25h mean, needs reinitialzation of the mean variable at midnight

17:29 Changeset [9472] by deazer

Speed up NOOS transects

16:25 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by mathiot
(diff)
16:24 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by mathiot
(diff)
14:38 New reply on Tools created by mgunduz
[SIREN] Segmentation fault - dimensions

2018-04-11:

18:04 Changeset [9471] by acc

Branch 2017/dev_merge_2017. Add protection around compiler directive in geo2ocean.F90 so that it is only applied for Intel compilers. See ticket #2074

16:16 Changeset [9470] by nicolasmartin

Fix docutils typo

16:14 user/flavoni edited by flavoni
(diff)
16:13 user/flavoni edited by flavoni
(diff)
16:11 Changeset [9469] by nicolasmartin

Set MIME type property of README.rst to be processed automatically under Trac

16:02 Changeset [9468] by nicolasmartin

Upload Re Structured? Text file (.rst) to test the build of a wiki page by inclusion

13:29 Ticket #2074 (Out of bounds error in the extended row form of lbcnfd) closed by acc
fixed
13:22 Changeset [9467] by acc

Branch 2017/dev_merge_2017. Fix for out of bounds error with the extended form of lbcnfd. See ticket #2074

13:20 Ticket #2074 (Out of bounds error in the extended row form of lbcnfd) created by acc
== Context Out of bounds error in the extended row form of lbcnfd which …

2018-04-10:

16:51 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by cbricaud
(diff)
11:38 New reply on Beginner created by mbareford
[ref-cfg] Intel build (with key_agrif) based on ORCA2_LIM seg faults

2018-04-09:

15:45 Changeset [9466] by jcastill

Move again some lines to allow merging with operational branches

2018-04-06:

19:57 Changeset [9465] by mathiot

ssh_bkginc deallocated twice

18:30 Changeset [9464] by clem

New configuration. This is a double agrif zoom in the Nordic Seas from ORCA2 to 1/2deg to 1/6deg. Input files are on ADA for now. This configuration will be better documented soon and will be integrated to sette tests. It will be subject to some changes to solve the remaining issues (restartability for example). At the end it will replace the Agulhas configuration

17:50 Changeset [9463] by jcastill

Modify a couple of lines to allow merging with the coupling branch - no science changes

17:48 Changeset [9462] by jcastill

Rearrange some lines so that it merges with operational branches

16:14 Changeset [9461] by aumont

bug fixes in iron cycle

14:54 Changeset [9460] by clem

correct the periodicity in the agrif zoom for sas biper test case

2018-04-05:

21:39 New reply on Skilled created by nicolasmartin
[HPC] NEMO on Xeon Phi
20:55 Users edited by nicolasmartin
(diff)

2018-04-04:

17:27 Changeset [9459] by clem

remove unecessary -O1 optimization in geo2ocean for agrif. I tested with -O3 and -O0 on intel proc, and both optimizations seem to work.

16:05 Changeset [9458] by clem

debug sas biper test case after the last commits

15:05 Changeset [9457] by clem

repair broken restart for sea-ice (from I do not know when)

09:24 Changeset [9456] by cetlod

dev_merge : Bugfix to avoid out-of-bounds in CFC model, see ticket #2073

09:21 Changeset [9455] by cetlod

Bugfix to avoid out-of-bounds in CFC model, see ticket #2073

09:17 Ticket #2073 (Out of bounds of passive tracers when using PISCES or another SMS model ...) created by cetlod
== Context NEMO-TOP is designed to be able to simulate SMS models and …

2018-04-03:

17:33 Changeset [9454] by clem

make sure that agrif is working with sea ice in any conditions

16:05 Ticket #2006 (ORCA2_LIM3_PISCES crashes after 179 timesteps in dev_merge_2017) closed by clevy
fixed
15:54 Ticket #2003 (minor bugs in PISCES) closed by clevy
fixed
15:52 Ticket #1987 (AGRIF code corruption tests not taken in account in SETTE report) closed by clevy
fixed
14:57 Changeset [9453] by clem

ensure that agrif works in debug mode. Agrif actually needs ua and va to be set to 0 at initialization, so that agrif_opa_sponge does not crash for floating point exception

2018-04-02:

17:38 New reply on Skilled created by patrizio
[FLO] Problem with NFLOAT in IOM.F90
14:17 New reply on Tools created by mgunduz
[SIREN] Unstructured open boundaries
14:08 New topic on Tools created by mgunduz
[SIREN] Segmentation fault - dimensions

2018-04-01:

15:49 New topic on Skilled created by damird
[HPC] NEMO on Xeon Phi

2018-03-30:

18:12 Changeset [9452] by clem

ensure perfect conservation in ridging/rafting routine which failed sometimes because of unrealistic ice thicknesses from advection scheme (>99m). Maybe we should prevent it to happen but it would mean hiding a defect

18:12 Changeset [9451] by aumont

delete useless p5zlim.F90

18:08 Changeset [9450] by aumont

debug PISCES code

17:37 Changeset [9449] by smasson

dev_merge_2017: agrif bugfix for non-constant jpi/jpj + some cleaning…

2018-03-29:

16:21 Tag change on System Team/Agenda/2018-04-12 by clevy
Tags VC added
09:12 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by cbricaud
(diff)

2018-03-28:

18:42 Changeset [9448] by clem

correct minor bugs mostly for outputs

17:51 Changeset [9447] by clem

debug the scalar outputs

17:17 Changeset [9446] by smasson

dev_merge_2017: bugfix of a very nice typo error following the reorganisation of nemogcm.F90 and mppini.F90 in r9436 see #2070

15:17 Changeset [9445] by nicolasmartin

Fix for PGI compilation of AGRIF on 3.6, ref #2072

15:14 Ticket #2072 (PGI fails in AGRIF compilation) created by nicolasmartin
== Context Build an AGRIF configuration with pgfortran stops at …
14:27 New reply on Beginner created by cheshenko
[AGRIF] PGI can not compile ORCA2_LIM with key_agrif
14:25 Changeset [9444] by smasson

dev_merge_2017: minor bugfix following the reorganisation of nemogcm.F90 and mppini.F90 r9436 see #2070

2018-03-27:

18:01 Ticket #2071 (Allowing more flexibility with the sea surface restoring subroutine) created by yruprich
== Context The default sbcssr subroutine does not allow to perform sea …
16:45 Changeset [9443] by andmirek

#2050 move sbc_init to original place

16:17 Ticket #2070 (Reorganisation of nemogcm.F90 and mppini.F90 to better separate domain ...) closed by acc
fixed
16:04 2019WP/VALID-01_clevy-AGRIF edited by clevy
(diff)
16:03 2019WP/VALID-01_clevy-AGRIF edited by clevy
(diff)
15:58 Changeset [9442] by acc

Branch 2017/dev_merge_2017. Local architecture and batch file update for compiler and XIOS versions

15:57 Changeset [9441] by acc

Branch 2017/dev_merge_2017. Reorganisation of nemogcm.F90 and mppini.F90. Stage 7: Add netcdf version of the run.stat files to stpctl.F90. Current implementation is very basic but may introduce opportunities for run-time monitoring; see ticket #2070

15:52 Changeset [9440] by acc

Branch 2017/dev_merge_2017. Reorganisation of nemogcm.F90 and mppini.F90. Stage 5: Enhancement to prtctl and suppression of overlap option; see ticket #2070

15:39 Changeset [9439] by acc

Branch 2017/dev_merge_2017. Reorganisation of nemogcm.F90 and mppini.F90. Stage 4: code update to sbcmod.F90 to remove redundant lbc_lnk call (emp); see ticket #2070

15:37 Changeset [9438] by acc

Branch 2017/dev_merge_2017. Reorganisation of nemogcm.F90 and mppini.F90. Stage 3: Better error handling in ctl_opn; see ticket #2070

15:35 Changeset [9437] by acc

Branch 2017/dev_merge_2017. Reorganisation of nemogcm.F90 and mppini.F90. Stage 2: code update to iom.F90 to take advantage of algorithmic fix; see ticket #2070

15:30 Changeset [9436] by acc

Branch 2017/dev_merge_2017. Reorganisation of nemogcm.F90 and mppini.F90 to better separate domain decomposition functions from the rest of the initialisation. Stage 1: Main reorganisation; see ticket #2070

15:25 Ticket #2070 (Reorganisation of nemogcm.F90 and mppini.F90 to better separate domain ...) created by acc
== Context Reorganisation of nemogcm.F90 and mppini.F90 to better separate …
15:20 Changeset [9435] by dford

Allow assimilation of PFT chlorophyll.

14:17 New reply on Beginner created by mbareford
[ref-cfg] Intel build (with key_agrif) based on ORCA2_LIM seg faults
12:39 New reply on Beginner created by nicolasmartin
[AGRIF] PGI can not compile ORCA2_LIM with key_agrif
12:24 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by cbricaud
(diff)
12:20 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by cbricaud
(diff)
10:32 Changeset [9434] by andmirek

#2067 add atribute for file opening

2018-03-26:

19:42 New reply on Beginner created by nicolasmartin
[AGRIF] PGI can not compile ORCA2_LIM with key_agrif
17:38 Changeset [9433] by clem

add two outputs: mean snow temperature and ice surface temperature per category

17:34 Changeset [9432] by dford

Rename logchlbal to phyto2dbal.

16:49 Changeset [9431] by dford

Allow assimilation of non-log chlorophyll, and prepare for assimilation of PFTs.

16:49 New reply on Skilled created by nicolasmartin
[FLO] Problem with NFLOAT in IOM.F90
16:47 Ticket #2069 (Compilation error with key_floats) closed by nicolasmartin
fixed: In 9430: […]
16:47 Changeset [9430] by nicolasmartin

Bugfix on trunk for key_floats compilation fix #2069

16:42 Changeset [9429] by nicolasmartin

Bugfix on 3.6 for key_floats compilation #2069

16:37 Ticket #2069 (Compilation error with key_floats) created by nicolasmartin
== Context Build a configuration with key_floats ends in a compilation …
16:11 Changeset [9428] by clem

simplification

15:38 Ticket #2068 (Wrong namelist double diffusion mixing parameter name) created by Robin_Waldman
== Context I am currently checking the activation of the EVD scheme in …
15:16 Changeset [9427] by clem

small bug in ice thickness redistribution

12:46 Changeset [9426] by andmirek

#2067 Open namelists in read only mode

12:46 Ticket #2067 (Open namelists in read only mode) created by andmirek
== Context One of the possible reason for significant NEMO slowdown during …
12:45 New reply on Skilled created by ebreitmo
[FCM] ZDFRIC.mod: target not found after an update:
11:30 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by mathiot
(diff)
11:14 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by mathiot
(diff)
10:16 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by cbricaud
(diff)
10:14 Scientific Advisory Board edited by clevy
(diff)
10:12 MembersOfCommittees.update2018.pdf attached to Scientific Advisory Board by clevy
10:11 Scientific Advisory Board edited by clevy
(diff)

2018-03-24:

12:59 New topic on Skilled created by patrizio
[FLO] Problem with NFLOAT in IOM.F90

2018-03-23:

23:39 Changeset [9425] by acc

Branch dev_merge_2017. Small bugfix to mpp_nfd_generic.h90 to get the ln_nnogather option working again. Tested with SETTE reproducibility tests and 4x8 and 8x4 decompositions give identical results to at least 1000 timesteps with and without ln_nnogather active.

15:07 New reply on Skilled created by nicolasmartin
[FCM] ZDFRIC.mod: target not found after an update:
13:46 New topic on Beginner created by cheshenko
[AGRIF] PGI can not compile ORCA2_LIM with key_agrif
09:57 Changeset [9424] by andmirek

#1881 initialize multidimensional array to 0 for XIOS read in iom_get_123d

2018-03-22:

20:38 Changeset [9423] by clem

small correction for the temperature diffusion when snow thickness is small

19:20 Changeset [9422] by jpalmier

JPALM — last modif after tests

18:55 Changeset [9421] by clem

cosmetics

18:53 Changeset [9420] by jpalmier

dd all atm CFC source file in any case

17:47 Changeset [9419] by jpalmier

JPALM — TOP last minute bug correction

16:35 Changeset [9418] by jpalmier

JPALM — switch back to CDIAC CFC file for CMIP experiment

16:28 Changeset [9417] by jpalmier

Create branch

12:42 Changeset [9416] by clem

debug icetsni output by initializing t_si in iceistate.F90

2018-03-21:

16:51 Changeset [9415] by clem

debug ice diffusion: avoid too small ice thicknesses by including a threshold (rn_himin) after ice dynamics. This should prevent the ice-ocean conduction flux from being abnormally strong

16:47 New reply on Tools created by jpaul
[SIREN] Restart file running error
16:33 New reply on Tools created by jpaul
[SIREN] Unstructured open boundaries
15:39 Changeset [9414] by nicolasmartin

Fix multiple defined references

14:43 Changeset [9413] by nicolasmartin

Complete review of 'Output and Diagnostic chapter',

  • Reduction of all lines to ~100 characters max for easier side-by-side diff
  • Use of \xmlcode{…}, \xmlline|…| and {xmllines} env. to include XML code
  • Split long tables for XML tags and attributes to smaller ones (per type family)
  • For readability, alignement of table cells content and replacement of simple equation env. by shortand syntax \[…\]
  • Several formatting modifications
14:38 New topic on Forks created by jaromir
[help-wanted] Lateral boundaries
12:51 New topic on Skilled created by ebreitmo
[FCM] ZDFRIC.mod: target not found after an update:

2018-03-20:

14:34 2018WP/Shared Actions edited by clevy
(diff)
12:19 user/flavoni/libIGCM_v3.6/config.card_description edited by nicolasmartin
(diff)
12:18 user/flavoni/libIGCM_v3.6/config.card_description edited by nicolasmartin
(diff)
11:23 Changeset [9412] by flavoni

cosmetics

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