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2018-04-06:

19:57 Changeset [9465] by mathiot: ssh_bkginc deallocated twice
18:30 Changeset [9464] by clem: New configuration. This is a double agrif zoom in the Nordic Seas from ORCA2 to 1/2deg to 1/6deg. Input files are on ADA for now. This configuration will be better documented soon and will be integrated to sette tests. It will be subject to some changes to solve the remaining issues (restartability for example). At the end it will replace the Agulhas configuration
17:50 Changeset [9463] by jcastill: Modify a couple of lines to allow merging with the coupling branch - no science changes
17:48 Changeset [9462] by jcastill: Rearrange some lines so that it merges with operational branches
16:14 Changeset [9461] by aumont: bug fixes in iron cycle
14:54 Changeset [9460] by clem: correct the periodicity in the agrif zoom for sas biper test case

2018-04-05:

21:39 New reply on Skilled created by nicolasmartin: [HPC] NEMO on Xeon Phi
20:55 Users edited by nicolasmartin: (diff)

2018-04-04:

17:27 Changeset [9459] by clem: remove unecessary -O1 optimization in geo2ocean for agrif. I tested with -O3 and -O0 on intel proc, and both optimizations seem to work.
16:05 Changeset [9458] by clem: debug sas biper test case after the last commits
15:05 Changeset [9457] by clem: repair broken restart for sea-ice (from I do not know when)
09:24 Changeset [9456] by cetlod: dev_merge : Bugfix to avoid out-of-bounds in CFC model, see ticket #2073
09:21 Changeset [9455] by cetlod: Bugfix to avoid out-of-bounds in CFC model, see ticket #2073
09:17 Ticket #2073 (Out of bounds of passive tracers when using PISCES or another SMS model ...) created by cetlod: == Context NEMO-TOP is designed to be able to simulate SMS models and …

2018-04-03:

17:33 Changeset [9454] by clem: make sure that agrif is working with sea ice in any conditions
16:05 Ticket #2006 (ORCA2_LIM3_PISCES crashes after 179 timesteps in dev_merge_2017) closed by clevy: fixed
15:54 Ticket #2003 (minor bugs in PISCES) closed by clevy: fixed
15:52 Ticket #1987 (AGRIF code corruption tests not taken in account in SETTE report) closed by clevy: fixed
14:57 Changeset [9453] by clem: ensure that agrif works in debug mode. Agrif actually needs ua and va to be set to 0 at initialization, so that agrif_opa_sponge does not crash for floating point exception

2018-04-02:

17:38 New reply on Skilled created by patrizio: [FLO] Problem with nfloat in iom.f90
14:17 New reply on Tools created by mgunduz: [SIREN] Unstructured open boundaries
14:08 New topic on Tools created by mgunduz: [SIREN] Segmentation fault - dimensions

2018-04-01:

15:49 New topic on Skilled created by damird: [HPC] NEMO on Xeon Phi

2018-03-30:

18:12 Changeset [9452] by clem: ensure perfect conservation in ridging/rafting routine which failed sometimes because of unrealistic ice thicknesses from advection scheme (>99m). Maybe we should prevent it to happen but it would mean hiding a defect
18:12 Changeset [9451] by aumont: delete useless p5zlim.F90
18:08 Changeset [9450] by aumont: debug PISCES code
17:37 Changeset [9449] by smasson: dev_merge_2017: agrif bugfix for non-constant jpi/jpj + some cleaning…

2018-03-29:

16:21 Tag change on System Team/Agenda/2018-04-12 by clevy: Tags VC added
09:12 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by cbricaud: (diff)

2018-03-28:

18:42 Changeset [9448] by clem: correct minor bugs mostly for outputs
17:51 Changeset [9447] by clem: debug the scalar outputs
17:17 Changeset [9446] by smasson: dev_merge_2017: bugfix of a very nice typo error following the reorganisation of nemogcm.F90 and mppini.F90 in r9436 see #2070
15:17 Changeset [9445] by nicolasmartin: Fix for PGI compilation of AGRIF on 3.6, ref #2072
15:14 Ticket #2072 (PGI fails in AGRIF compilation) created by nicolasmartin: == Context Build an AGRIF configuration with pgfortran stops at …
14:27 New reply on Skilled created by cheshenko: [AGRIF] PGI can not compile ORCA2_LIM with key_agrif
14:25 Changeset [9444] by smasson: dev_merge_2017: minor bugfix following the reorganisation of nemogcm.F90 and mppini.F90 r9436 see #2070

2018-03-27:

18:01 Ticket #2071 (Allowing more flexibility with the sea surface restoring subroutine) created by yruprich: == Context The default sbcssr subroutine does not allow to perform sea …
16:45 Changeset [9443] by andmirek: #2050 move sbc_init to original place
16:17 Ticket #2070 (Reorganisation of nemogcm.F90 and mppini.F90 to better separate domain ...) closed by acc: fixed
16:04 2019WP/VALID-01_clevy-AGRIF edited by clevy: (diff)
16:03 2019WP/VALID-01_clevy-AGRIF edited by clevy: (diff)
15:58 Changeset [9442] by acc: Branch 2017/dev_merge_2017. Local architecture and batch file update for compiler and XIOS versions
15:57 Changeset [9441] by acc: Branch 2017/dev_merge_2017. Reorganisation of nemogcm.F90 and mppini.F90. Stage 7: Add netcdf version of the run.stat files to stpctl.F90. Current implementation is very basic but may introduce opportunities for run-time monitoring; see ticket #2070
15:52 Changeset [9440] by acc: Branch 2017/dev_merge_2017. Reorganisation of nemogcm.F90 and mppini.F90. Stage 5: Enhancement to prtctl and suppression of overlap option; see ticket #2070
15:39 Changeset [9439] by acc: Branch 2017/dev_merge_2017. Reorganisation of nemogcm.F90 and mppini.F90. Stage 4: code update to sbcmod.F90 to remove redundant lbc_lnk call (emp); see ticket #2070
15:37 Changeset [9438] by acc: Branch 2017/dev_merge_2017. Reorganisation of nemogcm.F90 and mppini.F90. Stage 3: Better error handling in ctl_opn; see ticket #2070
15:35 Changeset [9437] by acc: Branch 2017/dev_merge_2017. Reorganisation of nemogcm.F90 and mppini.F90. Stage 2: code update to iom.F90 to take advantage of algorithmic fix; see ticket #2070
15:30 Changeset [9436] by acc: Branch 2017/dev_merge_2017. Reorganisation of nemogcm.F90 and mppini.F90 to better separate domain decomposition functions from the rest of the initialisation. Stage 1: Main reorganisation; see ticket #2070
15:25 Ticket #2070 (Reorganisation of nemogcm.F90 and mppini.F90 to better separate domain ...) created by acc: == Context Reorganisation of nemogcm.F90 and mppini.F90 to better separate …
15:20 Changeset [9435] by dford: Allow assimilation of PFT chlorophyll.
14:17 New reply on Skilled created by mbareford: [AGRIF] Intel build (with key_agrif) based on ORCA2_LIM seg faults
12:39 New reply on Skilled created by nicolasmartin: [AGRIF] PGI can not compile ORCA2_LIM with key_agrif
12:24 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by cbricaud: (diff)
12:20 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by cbricaud: (diff)
10:32 Changeset [9434] by andmirek: #2067 add atribute for file opening

2018-03-26:

19:42 New reply on Skilled created by nicolasmartin: [AGRIF] PGI can not compile ORCA2_LIM with key_agrif
17:38 Changeset [9433] by clem: add two outputs: mean snow temperature and ice surface temperature per category
17:34 Changeset [9432] by dford: Rename logchlbal to phyto2dbal.
16:49 Changeset [9431] by dford: Allow assimilation of non-log chlorophyll, and prepare for assimilation of PFTs.
16:49 New reply on Skilled created by nicolasmartin: [FLO] Problem with nfloat in iom.f90
16:47 Ticket #2069 (Compilation error with key_floats) closed by nicolasmartin: fixed: In 9430: […]
16:47 Changeset [9430] by nicolasmartin: Bugfix on trunk for key_floats compilation fix #2069
16:42 Changeset [9429] by nicolasmartin: Bugfix on 3.6 for key_floats compilation #2069
16:37 Ticket #2069 (Compilation error with key_floats) created by nicolasmartin: == Context Build a configuration with key_floats ends in a compilation …
16:11 Changeset [9428] by clem: simplification
15:38 Ticket #2068 (Wrong namelist double diffusion mixing parameter name) created by Robin_Waldman: == Context I am currently checking the activation of the EVD scheme in …
15:16 Changeset [9427] by clem: small bug in ice thickness redistribution
12:46 Changeset [9426] by andmirek: #2067 Open namelists in read only mode
12:46 Ticket #2067 (Open namelists in read only mode) created by andmirek: == Context One of the possible reason for significant NEMO slowdown during …
12:45 New reply on Skilled created by ebreitmo: [FCM] ZDFRIC.mod: target not found after an update:
11:30 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by mathiot: (diff)
11:14 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by mathiot: (diff)
10:16 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by cbricaud: (diff)
10:14 Scientific Advisory Board edited by clevy: (diff)
10:12 MembersOfCommittees.update2018.pdf attached to Scientific Advisory Board by clevy
10:11 Scientific Advisory Board edited by clevy: (diff)

2018-03-24:

12:59 New topic on Skilled created by patrizio: [FLO] Problem with nfloat in iom.f90

2018-03-23:

23:39 Changeset [9425] by acc: Branch dev_merge_2017. Small bugfix to mpp_nfd_generic.h90 to get the ln_nnogather option working again. Tested with SETTE reproducibility tests and 4x8 and 8x4 decompositions give identical results to at least 1000 timesteps with and without ln_nnogather active.
15:07 New reply on Skilled created by nicolasmartin: [FCM] ZDFRIC.mod: target not found after an update:
13:46 New topic on Skilled created by cheshenko: [AGRIF] PGI can not compile ORCA2_LIM with key_agrif
09:57 Changeset [9424] by andmirek: #1881 initialize multidimensional array to 0 for XIOS read in iom_get_123d

2018-03-22:

20:38 Changeset [9423] by clem: small correction for the temperature diffusion when snow thickness is small
19:20 Changeset [9422] by jpalmier: JPALM — last modif after tests
18:55 Changeset [9421] by clem: cosmetics
18:53 Changeset [9420] by jpalmier: dd all atm CFC source file in any case
17:47 Changeset [9419] by jpalmier: JPALM — TOP last minute bug correction
16:35 Changeset [9418] by jpalmier: JPALM — switch back to CDIAC CFC file for CMIP experiment
16:28 Changeset [9417] by jpalmier: Create branch
12:42 Changeset [9416] by clem: debug icetsni output by initializing t_si in iceistate.F90

2018-03-21:

16:51 Changeset [9415] by clem

debug ice diffusion: avoid too small ice thicknesses by including a threshold (rn_himin) after ice dynamics. This should prevent the ice-ocean conduction flux from being abnormally strong

16:47 New reply on Tools created by jpaul

[SIREN] Restart file running error

16:33 New reply on Tools created by jpaul

[SIREN] Unstructured open boundaries

15:39 Changeset [9414] by nicolasmartin

Fix multiple defined references

14:43 Changeset [9413] by nicolasmartin

Complete review of 'Output and Diagnostic chapter',

Reduction of all lines to ~100 characters max for easier side-by-side diff
Use of \xmlcode{…}, \xmlline|…| and {xmllines} env. to include XML code
Split long tables for XML tags and attributes to smaller ones (per type family)
For readability, alignement of table cells content and replacement of simple equation env. by shortand syntax \[…\]
Several formatting modifications

14:38 New topic on Forks created by jaromir

[help-wanted] Lateral boundaries

12:51 New topic on Skilled created by ebreitmo

[FCM] ZDFRIC.mod: target not found after an update:

2018-03-20:

14:34 2018WP/Shared Actions edited by clevy: (diff)
12:19 user/flavoni/libIGCM_v3.6/config.card_description edited by nicolasmartin: (diff)
12:18 user/flavoni/libIGCM_v3.6/config.card_description edited by nicolasmartin: (diff)
11:23 Changeset [9412] by flavoni: cosmetics

2018-03-19:

13:49 Changeset [9411] by davestorkey: UKMO/dev_r8864_restart_date branch: bug fix.
13:18 user/flavoni edited by flavoni: (diff)
13:17 user/flavoni edited by flavoni: (diff)
12:49 user/flavoni edited by flavoni: (diff)
12:43 user/flavoni edited by flavoni: (diff)
12:39 user/flavoni/libIGCM_v4.0a edited by flavoni: (diff)
12:37 user/flavoni/libIGCM_v4.0a edited by flavoni: (diff)
12:34 user/flavoni/libIGCM_v4.0a edited by flavoni: (diff)
12:15 user/flavoni/libIGCM_v4.0a edited by flavoni: (diff)

2018-03-16:

19:58 Changeset [9410] by clem: avoid crash when -O0 optimization and ln_icediachk activated
19:15 Changeset [9409] by clem: debug to avoid crashing when -O0 optimization and ln_icediachk activated

2018-03-15:

18:00 Changeset [9408] by nicolasmartin

Typos fixes for undefined refs, 'Pe_flt' and 'tra_adv_zco' are still missing

17:40 Changeset [9407] by nicolasmartin

Complete refactoring of cross-referencing

Use of \autoref instead of simple \ref for contextual text depending on target type
creation of few prefixes for marker to identify the type reference: apdx|chap|eq|fig|sec|subsec|tab

17:29 Changeset [9406] by mathiot

fix for ticket #2066 in nemo 3.6

17:29 Changeset [9405] by andmirek

#1953 and #1962: Initialize lwxios and ln_xios_read

17:27 Ticket #2066 (bug if eos10 and interactive melt activated) created by mathiot

== Context Ice shelf cavities with interactive melt are working only for …

17:16 Changeset [9404] by mathiot

remove call timing_stop added during the merge with XIOS r/w

16:31 Tag change on System Team/Agenda/2018-03-15 by smasson

Tags VC added

15:57 Changeset [9403] by smasson

dev_merge_2017: update test_cases CANAL

15:55 Changeset [9402] by smasson

dev_merge_2017: update test_cases CANAL

2018-03-14:

18:30 Ticket #2065 (CFC gas transfer velocity: wrong coefficient?) closed by lovato: fixed: The code is supposed to use the coefficients described in Wanninkhof …
18:19 Changeset [9401] by lovato: trunk : Revise CFC gas transfer velocity and add CDIAC forcing file (#2065)
18:18 Changeset [9400] by lovato: v3.6 stable : Revise CFC gas transfer velocity and add CDIAC forcing file (#2065)
15:48 Changeset [9399] by smasson: dev_merge_2017: minor bugfix in diawri.F
14:33 Changeset [9398] by clem: dev_merge_2017: change ice routines so that reproducibility issue is solved for the ice (but there is still repro issue between r8996 and r9012 in dev_CNRS_2017 after 268 time steps of orca2-lim3-pisces)
14:27 Changeset [9397] by clem: dev_CNRS_2017: change ice routines so that reproducibility issue is solved for the ice (but there is still repro issue between r8996 and r9012 after 268 time steps of orca2-lim3-pisces)
11:59 Changeset [9396] by clem: dev_ICEMODEL: make the branche reproducible
09:40 Changeset [9395] by andmirek: #2050 move sbc_init
01:31 Working Groups/TOP/TOP-User Quick Guide edited by lovato: (diff)
01:26 Working Groups/TOP/TOP-User Quick Guide edited by lovato: (diff)
01:23 Working Groups/TOP/TOP-User Quick Guide edited by lovato: (diff)
00:49 Working Groups/TOP/TOP-User Quick Guide edited by lovato: (diff)
00:31 Working Groups/TOP/TOP-User Quick Guide edited by lovato: (diff)

2018-03-13:

23:54 Working Groups/TOP/TOP-User Quick Guide edited by lovato: (diff)
21:21 Changeset [9394] by nicolasmartin: Fix several typos, reverse (biblio then index) and shrink the manual backmatter (columns, font size, separator height) #1793
15:00 Changeset [9393] by nicolasmartin: Cleaning of section headings, reinstating the index by mixing \np and \forcode macros, continued conversion of source code inclusions

2018-03-12:

13:49 2018WP/ENHANCE-13_Olivier-Vertical_Sinking edited by lovato: (diff)
13:45 2018WP/ROBUST-03_CEthe-TOPDoc edited by lovato: (diff)
13:19 New topic on Tools created by mgunduz: [SIREN] Unstructured open boundaries
11:36 user/flavoni edited by flavoni: (diff)
11:35 user/flavoni edited by flavoni: (diff)

2018-03-09:

16:57 Changeset [9392] by nicolasmartin: Global replacement of patterns \np{id}=value by \forcode{id = value} for integer and booleans
15:26 Changeset [9391] by davestorkey: UKMO/dev_r8864_restart_date branch: bug fixes
14:41 Changeset [9390] by davestorkey: UKMO/dev_r8864_restart_date branch: commit changes.
12:15 2018WP/HPC-01_Silvia Mocavero_singlecoreperf edited by mocavero: (diff)
11:01 2018WP/Shared Actions edited by mathiot: (diff)
10:40 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by clevy: (diff)
09:56 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by cbricaud: (diff)

2018-03-08:

21:56 Changeset [9389] by nicolasmartin: Starting to use minted macros to highlight namelists parameters: \textit → \forcode
Work in progress as all escape characters (\) have to be removed in namelist parameter ids
Then several \np macros along with their paramater values with will be replaced by \forcode{np = value} apart from section headings for indexing
Fixes: style issue by reordering preamble section, removing \np macros inside equations and editing path to NEMO_manual.tex for subfiles.
17:57 Changeset [9388] by nicolasmartin: Global reorganisation of DOC directory: implementation and configuration of syntax highlighting with 'minted' LaTeX package
New macros have been created to insert different source codes (fortran, xml, c and shell-session) in the document.
Pygments Python package is now required to compile the documentation.
13:36 Changeset [9387] by andmirek: #2050 changes for sette 3 to work
12:49 Changeset [9386] by andmirek: move sbc_init below dom_init
12:36 Changeset [9385] by marc: GMED ticket 380. Merge changes from Julien's branches/NERC/dev_r5518_GO6_CO2_cmip.
11:36 Changeset [9384] by jpalmier: Jpalm — uniform field_def_bgc unit typo
10:22 Changeset [9383] by andmirek: #2050 fixes and changes

2018-03-07:

21:28 New topic on Tools created by bugone1: [SIREN] Restart file running error
18:23 Changeset [9382] by dford: Account for balancing increments, and don't allow any increments to take variables negative.
16:19 Changeset [9381] by dford: Implement pH balancing.
13:14 Changeset [9380] by jpalmier: JPALM — add the *_INV variables Missing long_name
12:43 Changeset [9379] by jpalmier: JPALM — Clean field_def_bgc
10:23 Ticket #1978 (Extend timer functionality) closed by andmirek: fixed: Reviewed and in GO6 package branch. gmed ticket 374.
08:12 Ticket #2065 (CFC gas transfer velocity: wrong coefficient?) created by mscheinert: == Context For the air-to-sea flux of CFCs/SF6 the gas transfer velocity …

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