Timeline


and

matching tags

2020-02-12:

17:57 Changeset [12379] by dancopsey

Add meltpond lid thickness as a new prognostic.

15:57 Changeset [12378] by acc

Create 2020 branches directory

15:39 Changeset [12377] by acc

The big one. Merging all 2019 developments from the option 1 branch back onto the trunk.

This changeset reproduces 2019/dev_r11943_MERGE_2019 on the trunk using a 2-URL merge
onto a working copy of the trunk. I.e.:

svn merge —ignore-ancestry \

svn+ssh://acc@forge.ipsl.jussieu.fr/ipsl/forge/projets/nemo/svn/NEMO/trunk \
svn+ssh://acc@forge.ipsl.jussieu.fr/ipsl/forge/projets/nemo/svn/NEMO/branches/2019/dev_r11943_MERGE_2019 ./

The —ignore-ancestry flag avoids problems that may otherwise arise from the fact that
the merge history been trunk and branch may have been applied in a different order but
care has been taken before this step to ensure that all applicable fixes and updates
are present in the merge branch.

The trunk state just before this step has been branched to releases/release-4.0-HEAD
and that branch has been immediately tagged as releases/release-4.0.2. Any fixes
or additions in response to tickets on 4.0, 4.0.1 or 4.0.2 should be done on
releases/release-4.0-HEAD. From now on future 'point' releases (e.g. 4.0.2) will
remain unchanged with periodic releases as needs demand. Note release-4.0-HEAD is a
transitional naming convention. Future full releases, say 4.2, will have a release-4.2
branch which fulfills this role and the first point release (e.g. 4.2.0) will be made
immediately following the release branch creation.

2020 developments can be started from any trunk revision later than this one.

15:06 Changeset [12376] by acc

Immediate tag copy of 4.0-HEAD as release-4.0.2. From now on point releases (such as this) should remain unchanged. Bug fixes or additions in response to tickets should be done on the 4.0-HEAD branch and a new point release made when appropriate

15:00 Changeset [12375] by acc

Copied trunk@12367 to releases/release-4.0-HEAD before merging in 2019 developments

13:58 Changeset [12374] by dancopsey

Get skin temperature to be passed from the atmosphere

13:39 Changeset [12373] by dancopsey

Revert last change

13:37 Changeset [12372] by acc

Branch 2019/dev_r11943_MERGE_2019. A few changes to align the option 1 branch with the trunk@12371. These include a fix for #2317 (changes for LFRA freshwater correction) which was done at changeset 12279 on the trunk. These affect dynatf.F90, traatf.F90 and isfdynatf.F90 and pass SETTE but change results in all tests that use freshwater input (expected). All other changes on the trunk are present (where applicable) up to and including changeset 12367 (Solve #2380)

13:13 Changeset [12371] by dancopsey

Add changes to match CICE settings.

13:09 Changeset [12370] by dancopsey

Add coupling changes.

13:06 Changeset [12369] by dancopsey

Add print statements

12:46 Changeset [12368] by dancopsey

Make a branch to add melt pond lids. This is the version with lots of print statements (do not use in long runs).

2020-02-11:

19:37 Changeset [12367] by clem

solve ticket #2380

17:12 Ticket #2380 (issues in fld_bdy_interp) created by clem
==== Context Running regional configuration when the number of vertical …
12:17 Changeset [12366] by jchanut

#2317, revert to the correct sign for asselin term on e3t and runoffs

12:13 Ticket #2317 (Wrong asselin correction due to runoffs for vertical scale factors - non ...) reopened by jchanut
11:38 2020WP/VALID-11_clevy_OASIS_TESTCASE edited by clevy
(diff)
11:32 2020WP/VALID-11_clevy_OASIS_TESTCASE edited by clevy
(diff)
11:24 2020WP/VALID-11_clevy_OASIS_TESTCASE edited by clevy
(diff)
11:12 2020WP/VALID-11_clevy_OASIS_TESTCASE edited by clevy
(diff)
10:34 2020WP/VALID-11_clevy_OASIS_TESTCASE edited by clevy
(diff)
10:34 Ticket #2379 (VALID-11_clevy_OASIS_TESTCASE) created by clevy
[…] ==== Workplan action Wikipage: …
10:24 Changeset [12365] by timgraham

Bug fix for iceberg restart files

2020-02-10:

18:21 Changeset [12364] by dcarneir

Modifications in diaobs.F90 to include SIT flags

14:59 rblod_download-3.jpg attached to User Manager Plugin Pictures by rblod
rblod's Avatar
14:57 Ticket #2378 (numnul with Agrif) created by rblod
==== Context Trying to run Vortex test case or Agrif Demo fails (compiled …
10:54 Changeset [12363] by kingr

Removing line which subtracts SSH inc in dynspg_ts (not used in GO6). This avoids introducing spurious near surface freshening when assimilating SSH obs.

10:52 Changeset [12362] by kingr

Minor edit to allow merging of obs branch with (amm15 and GO6) package branches.

2020-02-07:

18:15 Changeset [12361] by aumont

add refernce namelist for the sediment module

18:13 Changeset [12360] by aumont

various bugfixes on the sediment module and on p4zmeso

2020-02-06:

16:41 Changeset [12359] by kingr

Removing line which subtracts SSH inc in dynspg_ts. This avoids introducing spurious near surface freshening when assimilating SSH obs.

16:40 Changeset [12358] by kingr

Removing line which subtracts SSH inc in dynspg_ts. This avoids introducing spurious near surface freshening when assimilating SSH obs.

16:31 Changeset [12357] by kingr

Create a branch for PS44 (AMM15 and AMM7).

16:29 Changeset [12356] by kingr

Create a branch for PS44 (AMM15 and AMM7).

15:28 Changeset [12355] by kingr

Removing line which subtracts SSH inc in dynspg_ts. This avoids introducing spurious near surface freshening when assimilating SSH obs.

14:58 Changeset [12354] by kingr

Reverted change made when merging branches at r10268. Removing this line avoids introducing spurious near surface freshening when assimilating SSH obs.

2020-02-05:

11:00 Tag change on System Team/Agenda/2020-02-06 by gsamson
Tags VC added

2020-02-01:

18:00 Working Groups/SI3 edited by vancop
(diff)
17:42 Working Groups/SI3 edited by vancop
(diff)
17:39 Working Groups/SI3 edited by vancop
(diff)

2020-01-31:

20:00 Ticket #2377 (Incorrect restart after the first year of the model run when option 2 of ...) created by smueller
==== Context The defect described in ticket #2376 was also found in the …
19:40 Ticket #2376 (Incorrect restart after the first year of the model run when option 2 of ...) created by smueller
==== Context Output from the model in a variant of the ORCA2_ICE_PISCES

2020-01-29:

17:15 Changeset [12353] by acc

Branch 2019/dev_r11943_MERGE_2019. Additions to the do loop macro implementation: converted a few loops previously missed because they used jpi-1 instead of jpim1 etc.; changed internal macro names in do_loop_substitute.h90 to strings that are much more unlikely to appear in any future code elsewhere and removed the key_vectopt_loop option (and all related code) since the do loop macros have suppressed this option. These changes have been fully SETTE-tested and this branch should now be ready to go back to the trunk.

13:24 Changeset [12352] by dford

Update biogeochemical BDY code, and fix a couple of bugs in FABM coupling code. See Met Office utils ticket 305.

12:57 Ticket #2375 (Check useless lbc_lnk in icb code) created by mathiot
[…] ==== Context After a grep on lbc_lnk (by curiousity), I found …
12:12 Changeset [12351] by smueller

Rectification of a defect that halved the maximum length of the interval between restarts in model runs with enabled temporal interpolation of forcing fields (field-information flag ln_tint set to .true.)

12:08 Changeset [12350] by smueller

Rectification of a defect that halved the maximum length of the interval between restarts in model runs with enabled temporal interpolation of forcing fields (field-information flag ln_tint set to .true.)

2020-01-28:

17:17 Changeset [12349] by aumont

update of the quota version of PISCES + some corrections of the GGE of zooplankton

17:16 Changeset [12348] by aumont

update of the pisces reference namelist

17:14 Ticket #2113 (Restoring restart ability with icebergs) closed by mathiot
fixed
17:13 Changeset [12347] by mathiot

change comments about lbc_lnk for icb (#2113)

17:08 Changeset [12346] by mathiot

change comments about lbc_lnk for icb (#2113)

16:16 Ticket #2374 (changes in option 2 version of iom.F90 which are not in the option 1 ...) created by acc
==== Context Whilst fixing iom.F90 for another ticket I noticed …
15:29 Ticket #2373 (dev_r11943_MERGE_2019 does not compile without key_iomput) closed by acc
fixed
15:28 Ticket #2372 (dev_r12072_MERGE_OPTION2_2019 does not compile without key_iomput) closed by acc
fixed
15:26 Changeset [12345] by acc

Branch dev_r12072_MERGE_OPTION2_2019. Fixed ticket #2372. Changes to enable compilation without key_iomput

15:17 Changeset [12344] by acc

Branch dev_r11943_MERGE_2019. Fixed ticket #2373. Changes to enable compilation without key_iomput

12:17 Ticket #2113 (Restoring restart ability with icebergs) reopened by mathiot
I don't understand how icbergs can affect emp over the haloes as before …
11:32 Ticket #2371 (dev_r11943_MERGE_2019 does not compile with gcc) closed by acc
fixed
11:31 Ticket #2370 (dev_r12072_MERGE_OPTION2_2019 does not compile with gcc) closed by acc
fixed
11:13 Changeset [12343] by acc

Branch 2019/dev_r11943_MERGE_2019. Implement recommended changes to fix ticket #2371

11:10 Changeset [12342] by acc

Branch 2019/dev_r12072_MERGE_OPTION2_2019. Implement recommended changes to fix ticket #2370

01:40 Ticket #2373 (dev_r11943_MERGE_2019 does not compile without key_iomput) created by smasson
the model does not compile without iomput… :-( same as #2372 but for …
01:38 Ticket #2372 (dev_r12072_MERGE_OPTION2_2019 does not compile without key_iomput) created by smasson
==== Context the model does not compile without key_iomput… :-( ==== …

2020-01-27:

20:50 Ticket #2371 (dev_r11943_MERGE_2019 does not compile with gcc) created by smasson
==== Context the model does not compile with gcc… :-( same as #2370 but …
20:45 Ticket #2370 (dev_r12072_MERGE_OPTION2_2019 does not compile with gcc) created by smasson
==== Context the model does not compile with gcc… :-( ==== Analysis …
18:26 Changeset [12341] by acc

Branch 2019/dev_r11943_MERGE_2019. Minor style changes to do_loop_substitute.h90

15:31 Changeset [12340] by acc

Branch 2019/dev_r11943_MERGE_2019. This commit introduces basic do loop macro
substitution to the 2019 option 1, merge branch. These changes have been SETTE
tested. The only addition is the do_loop_substitute.h90 file in the OCE directory but
the macros defined therein are used throughout the code to replace identifiable, 2D-
and 3D- nested loop opening and closing statements with single-line alternatives. Code
indents are also adjusted accordingly.

The following explanation is taken from comments in the new header file:

This header file contains preprocessor definitions and macros used in the do-loop
substitutions introduced between version 4.0 and 4.2. The primary aim of these macros
is to assist in future applications of tiling to improve performance. This is expected
to be achieved by alternative versions of these macros in selected locations. The
initial introduction of these macros simply replaces all identifiable nested 2D- and
3D-loops with single line statements (and adjusts indenting accordingly). Do loops
are identifiable if they comform to either:

DO jk = ….

DO jj = …. DO jj = …

DO ji = …. DO ji = …
. OR .
. .

END DO END DO

END DO END DO

END DO

and white-space variants thereof.

Additionally, only loops with recognised jj and ji loops limits are treated; these are:
Lower limits of 1, 2 or fs_2
Upper limits of jpi, jpim1 or fs_jpim1 (for ji) or jpj, jpjm1 or fs_jpjm1 (for jj)

The macro naming convention takes the form: DO_2D_BT_LR where:

B is the Bottom offset from the PE's inner domain;
T is the Top offset from the PE's inner domain;
L is the Left offset from the PE's inner domain;
R is the Right offset from the PE's inner domain

So, given an inner domain of 2,jpim1 and 2,jpjm1, a typical example would replace:

DO jj = 2, jpj

DO ji = 1, jpim1
.
.

END DO

END DO

with:

DO_2D_01_10
.
.
END_2D

similar conventions apply to the 3D loops macros. jk loop limits are retained
through macro arguments and are not restricted. This includes the possibility of
strides for which an extra set of DO_3DS macros are defined.

In the example definition below the inner PE domain is defined by start indices of
(kIs, kJs) and end indices of (kIe, KJe)

#define DO_2D_00_00 DO jj = kJs, kJe ; DO ji = kIs, kIe
#define END_2D END DO ; END DO

TO DO:


Only conventional nested loops have been identified and replaced by this step. There are constructs such as:

DO jk = 2, jpkm1

z2d(:,:) = z2d(:,:) + e3w(:,:,jk,Kmm) * z3d(:,:,jk) * wmask(:,:,jk)

END DO

which may need to be considered.

14:50 Changeset [12339] by cetlod

MG2019 : defining ice transport component on U/V grid ; otherwise grid transformation fails when trying to compute strait

14:49 Changeset [12338] by cetlod

MG2019_OPT2 : defining ice transport component on U/V grid ; otherwise grid transformation fails when trying to compute strait

14:47 Changeset [12337] by cetlod

trunk : defining ice transport component on U/V grid ; otherwise grid transformation fails when trying to compute strait

2020-01-24:

17:25 Changeset [12336] by acc

Branch 2019/dev_r11943_MERGE_2019. A few neutral changes to loop statements so that the perl scripts to perform the upcoming DO LOOP macros substitutions will recognise a few loops that diverge from the common coding convention. These include loops where ji and jj are unnecessarily swapped in order; loops that use jpi-1 (for example) instead of jpim1 and loops with comments between the END DO statements

2020-01-23:

04:09 setup_liga-logo-bulat.png attached to User Manager Plugin Pictures by setup
setup's Avatar

2020-01-22:

15:44 Scientific Advisory Board/Agenda/2020-01-08 edited by mcastril
(diff)
11:41 2020WP/TOP-01_rlod_Antarctic_ice_Sheet_Fe_Source edited by clevy
(diff)
10:29 2020WP/KERNEL-06_techene_better_e3_management edited by techene
(diff)
10:27 2020WP/KERNEL-06_techene_better_e3_management edited by techene
(diff)
08:56 2020WP/PUB-05_SI3_documentation edited by vancop
(diff)
08:31 2020WP/PUB-03_NDS_CHAPTER edited by vancop
(diff)
08:27 2020WP/SI3-03_VP_rheology edited by vancop
(diff)
08:27 2020WP/SI3-04_lagrangian_drifters edited by vancop
(diff)
08:21 2020WP/SI3-03_VP_rheology edited by vancop
(diff)

2020-01-21:

22:14 2020WP/ENHANCE-04_dford_OBSOP_BGC edited by dford
(diff)
19:07 2020WP/HPC-07_mocavero_mpi3 edited by francesca
(diff)
18:41 2020WP/KERNEL-05_jchanut_ztilde edited by jchanut
(diff)
18:30 2020WP/KERNEL-05_jchanut_ztilde edited by jchanut
(diff)
18:23 2020WP/PHYPRO-03_jchanut_IWdrag edited by jchanut
(diff)
18:21 2020WP/PHYPRO-03_jchanut_IWdrag edited by jchanut
(diff)
18:10 2020WP/AGRIF-05_rblod_CMEMS edited by jchanut
(diff)
17:54 2020WP/AGRIF-03_jchanut_vert_coord_interp edited by jchanut
(diff)
17:52 Ticket #2308 (Optimization of the communications in DYN) closed by girrmann
duplicate: Replying to girrmann: > ==== Summary > > ||=Action || …
16:32 2020WP/ENHANCE-09_rbourdal_massfluxconvection edited by rbourdal
(diff)
16:31 2020WP/VALID-08_gsamson_ORCA-ABL-BLK edited by gsamson
(diff)
16:21 2020WP/ENHANCE-13_gsamson_ABL_TOOLS edited by gsamson
(diff)
16:04 Changeset [12335] by frrh

Copy of GO8 package branch to fix bugs
revealed by intel compiler.

16:04 Changeset [12334] by dancopsey

Make isnow a fraction of the sea ice that is snow covered.

15:59 2020WP edited by clevy
(diff)
15:10 2020WP/ENHANCE-08_davestorkey_fix_2D_vorticity_trends edited by davestorkey
(diff)
15:08 2020WP/ENHANCE-01_davestorkey_fix_3D_momentum_trends edited by davestorkey
(diff)
15:01 2020WP/ASINTER-04_laurent_bulk_ice edited by laurent
(diff)
14:59 2020WP/ASINTER-04_laurent_bulk_ice edited by laurent
(diff)
14:56 2020WP/ASINTER-04_laurent_bulk_ice edited by laurent
(diff)
14:53 2020WP/ASINTER-04_laurent_bulk_ice edited by laurent
(diff)
14:52 2020WP/ASINTER-03_laurent_bulk_and_wave edited by laurent
(diff)
14:52 2020WP/ASINTER-03_laurent_bulk_and_wave edited by laurent
(diff)
14:50 2020WP/ASINTER-03_laurent_bulk_and_wave edited by laurent
(diff)
14:50 2020WP/ASINTER-03_laurent_bulk_and_wave edited by laurent
(diff)
12:29 2020WP/HPC-10_mcastril_HPDAonline DiagGPU edited by mcastril
(diff)
12:09 Ticket #2133 (HPC-09_Maisonnave-ATOS-ESIWACE) closed by emalod
fixed
12:08 Ticket #2150 (TOP-06_emalod_OASIS_interface_between_TOP_and_NEMO) closed by emalod
duplicate
11:55 2020WP/HPC-04_mcastril_Mixed_Precision_implementation edited by mcastril
(diff)
11:54 2020WP/HPC-04_mcastril_Mixed_Precision_implementation edited by mcastril
(diff)
11:46 Ticket #2195 (HPC-08_XXX_fldread_with_XIOS) closed by andmirek
wontfix
11:45 2019WP/HPC-08_Mirek Andrejczuk_fldread_with_XIOS edited by andmirek
(diff)
11:43 2019WP/HPC-11_Mirek_Andrejczuk_IO_with_XIOS edited by andmirek
(diff)
11:41 2019WP/HPC-05_Mirek Andrejczuk_IOdev edited by andmirek
(diff)
11:37 Ticket #2050 (read namelists using single processor) closed by andmirek
duplicate
11:37 2020WP/PUB-01_cbricaud_crs edited by cbricaud
(diff)
11:37 Ticket #2067 (Open namelists in read only mode) closed by andmirek
wontfix
11:36 Ticket #2320 (Improvements in text output) closed by andmirek
wontfix: To be part of 2020WP
11:35 Ticket #2176 (ENHANCE-07_JamesH-sigma_under_ISF) closed by jamesharle
wontfix: This work ended up being delayed as several modifications to the ISF code …
11:35 Ticket #2323 (read/write SI3 restart with XIOS) closed by andmirek
wontfix
11:27 2020WP/ASINTER-02_emanuelaclementi_Waves edited by emanuelaclementi
(diff)
11:17 2020WP/ENHANCE-05_mathiot_REBUILD edited by mathiot
(diff)

2020-01-20:

17:56 2020WP/ASINTER-03_laurent_bulk_and_wave edited by laurent
(diff)
17:45 2020WP/ASINTER-04_laurent_bulk_ice edited by laurent
(diff)

2020-01-17:

17:33 Changeset [12333] by dancopsey

Remove outer IF test that tests for snow thicknesses greater than 0.1. This is already delt with by using the isnow method further up in the code.

17:14 Changeset [12332] by dancopsey

Make branch.

09:00 Changeset [12331] by cetlod

trunk : Minor changes on grid_def

2020-01-16:

17:34 Changeset [12330] by dancopsey

Pass t_i as the layer 1 sea ice temperature.

13:28 Changeset [12329] by agn

restored modernised diahth w/o key

10:35 Changeset [12328] by cetlod

dev_r11943_MERGE_2019 : minor fix to avoid compilation error when using an OCE+TOP configuration without key_top enabled

10:34 Changeset [12327] by cetlod

dev_r12072_MERGE_OPTION2_2019: minor fix to avoid compilation error when using an OCE+TOP configuration without key_top enabled

07:56 Changeset [12326] by deazer

Adjusted to account for flux form advection
should now work with both types of advection and enveloping bathymetry
moved one off caluculations of depth scales to domain.F90

2020-01-15:

16:50 2020WP edited by mathiot
(diff)
16:41 2020WP edited by mathiot
(diff)
16:39 2020WP edited by mathiot
(diff)
16:03 2020WP/ENHANCE-14_smueller_OSMOSIS_streamlining edited by smueller
(diff)
15:40 2020WP/PHYPRO-01_agn_OSMOSIS_science edited by smueller
(diff)
15:17 2020WP edited by diovino
(diff)
14:13 2020WP edited by mathiot
(diff)
14:06 2020WP edited by mathiot
(diff)
13:26 Changeset [12325] by francesca

replace halo-copy routines - ticket #2009

12:47 Ticket #2188 (SI3-07_tsamados_drags) closed by clevy
wontfix
12:47 Changeset [12324] by cguiavarch

Update with George's latest changes for restartability and reproducibility
( Merge changes 12310:12321 from NEMO/branches/2019/dev_r11078_OSMOSIS_IMMERSE_Nurser)

12:47 Ticket #2029 (SI3-01(2018WP)_topographic_meltponds) closed by clevy
wontfix
12:29 2020WP edited by diovino
(diff)
12:22 Ticket #2369 (ASINTER-04_laurent_bulk_ice) created by laurent
[…] ==== Workplan action Wikipage: …
12:19 2020WP/ASINTER-04_laurent_bulk_ice created by clevy
12:19 Tag change on 2020WP/ASINTER-04_laurent_bulk_ice by clevy
Tags WP added
12:14 2020WP edited by clevy
(diff)
12:11 2020WP edited by clevy
(diff)
10:59 Changeset [12323] by cguiavarch

Merge changes from /NEMO/branches/2019/dev_r11078_OSMOSIS_IMMERSE_Nurser:12178-12226

10:33 Changeset [12322] by cguiavarch

Update with George's latest changes for restartability and reproducibility

2020-01-14:

18:28 Changeset [12321] by agn

added blank namelist sections namtra_mle, namzdf_osm, namosm_mle to cfgs/{GYRE_PISCES,ORCA2_ICE_PISCES}/EXPREF/namelist_cfg

18:28 Changeset [12320] by agn

When key_top and ln_zdfosm chosen, relax ctl_stop to ctl_warn in zdfphy.F90

18:28 Changeset [12319] by agn

FKOSM reproducible after wrapping hbl, hble, dh with ln_lnk_multi & calc ibld over halo points

17:55 2020WP edited by laurent
(diff)
17:53 2020WP edited by laurent
(diff)
14:20 Changeset [12318] by cguiavarch

Create a branch for FKOSM (Fox-Kemper OSMOSIS)

13:40 Changeset [12317] by agn

hmle is now restartable

13:40 Changeset [12316] by agn

added extra trends to field_def_nemo-oce.xml

13:40 Changeset [12315] by agn

define grid_T_SFC in grid_def_nemo.xml

13:40 Changeset [12314] by agn

new namsbc_blk variable ln_humi_dpt added to namelist_ref

13:40 Changeset [12313] by agn

Modify sbcblk.F90 to accept humidity as dewpoint

13:40 Changeset [12312] by agn

restored option to output zd[tsb]dz_pyc

12:49 Ticket #2197 (HPC-09_Mireck_OpenACC) closed by mathiot
wontfix: postpone in 2020 as part of HPC-01_daley_GPU
12:19 2020WP edited by mathiot
(diff)
11:18 Changeset [12311] by cguiavarch

Corrected reversion in tramle.F90 whereby ikmax set too late

10:00 Tag change on System Team/Agenda/2020-01-16 by gsamson
Tags VC added

2020-01-13:

16:30 Scientific Advisory Board/Agenda/2020-01-08 edited by mikebell
(diff)
15:18 Scientific Advisory Board/Agenda/2020-01-08 edited by francesca
(diff)
15:08 2020WP/TOP-02_rlod_Sea Ice_Fe_Source edited by aumont
(diff)
14:23 2020WP/TOP-02_rlod_Sea Ice_Fe_Source edited by rlod
(diff)
12:39 Scientific Advisory Board/Agenda/2020-01-08 edited by mikebell
(diff)
11:56 Scientific Advisory Board/Agenda/2020-01-08 edited by diovino
(diff)
11:55 Scientific Advisory Board/Agenda/2020-01-08 edited by diovino
(diff)
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