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2014-02-25:

17:05 Changeset [4519] by flavoni

small changes in ice plots, see ticket #724

16:20 Changeset [4518] by flavoni

change months in ice plot, see ticket #724

15:39 Changeset [4517] by flavoni

change order of plots ocean first; ice last, see ticket #724

15:12 Changeset [4516] by flavoni

small fix in plots, see ticket #724

12:42 Changeset [4515] by flavoni

add ice pots & time series, see ticket #724

12:41 Changeset [4514] by flavoni

add ice pots & time series, see ticket #724

2014-02-24:

14:37 Ticket #1248 (wrong horizontal diffusive trends indice used in TOP) closed by cetlod
fixed
12:46 Changeset [4513] by cetlod

v3.6alpha: bugfix in trcbbl.F90, see ticket #1248

12:45 Changeset [4512] by cetlod

trunk: bugfix in trcbbl.F90, see ticket #1248

12:44 Ticket #1248 (wrong horizontal diffusive trends indice used in TOP) created by cetlod
In trcbbl.F90 the indice used for trend computation is the one for lateral …
12:31 Ticket #1246 (Bug in TOP_SRC/TRP/trdmld_trc.F90 Allocation problem.) closed by cetlod
fixed
12:31 Changeset [4511] by cetlod

trunk: bugfix in trdmld_trc.F90, see ticket #1246

12:24 Changeset [4510] by cetlod

v3.4 stable: bugfix in trdmld_trc.F90, see ticket #1246

12:23 Changeset [4509] by cetlod

v3.6alpha: bugfix in trdmld_trc.F90, see ticket #1246

12:20 Ticket #1247 (bug in limdia) closed by cetlod
fixed
12:19 Changeset [4508] by cetlod

bugfix in limdia, see ticket #1247

12:15 Ticket #1247 (bug in limdia) created by cetlod
The ice statistics in LIM2 are computed online only if the model runs in …

2014-02-21:

16:05 Ticket #1246 (Bug in TOP_SRC/TRP/trdmld_trc.F90 Allocation problem.) created by molines
* From Aurelie Albert : bug in the routine trd_mld_bio_zint in module …
16:05 Changeset [4507] by flavoni

commit ICE Salinity plots for ORCA2_LIM, see ticket #724

16:03 Ticket #1245 (Memory leak during tangent-linear and adjoint time steps) created by sam
Memory leaks are caused by the code in …
15:27 Ticket #1244 (Erroneous makefile generated for model configuration with 'key_mpp_mpi') created by sam
The preprocessor directive '#include' in …
15:20 Changeset [4506] by vancop

[Heat conservation in LIM3, part HC1 (LIM_SRC_3_HC17)]

15:20 Changeset [4505] by vancop

[Heat conservation in LIM3, part HC1, LIM_SRC_3_HC17]

15:02 Changeset [4504] by flavoni

fix small improvements in idl plots, see ticket #724

14:49 Changeset [4503] by vancop

remove wrong branch

14:46 Changeset [4502] by vancop

ccreate branche for heat conservation

13:29 Working Groups/LIM/Meetings/2014_02_21 created by vancop
13:24 Working Groups/LIM/Meetings edited by vancop
(diff)
09:59 Working Groups/Configuration Manager edited by jpaul
(diff)
09:58 Working Groups/Configuration Manager edited by jpaul
(diff)
09:22 Working Groups/Configuration Manager edited by jamesharle
(diff)
09:13 Working Groups/Configuration Manager edited by jamesharle
(diff)
09:10 Working Groups/Configuration Manager edited by jamesharle
(diff)

2014-02-20:

14:21 Changeset [4501] by flavoni

add snow thickness plots, see ticket #724

2014-02-18:

16:27 Ticket #1242 (Advection schemes cause trd_trc to be called when key not set) closed by timgraham
fixed
16:26 Changeset [4500] by timgraham

Modified advection schemes as in #1242 to prevent trdtrd being called when key_trdtra is set but key_trdtrc is not set.

16:16 Ticket #1243 (Advection schemes cause trd_trc to be called when key not set) closed by timgraham
fixed
16:14 Changeset [4499] by timgraham

Modified advection schemes as in #1243 to prevent trdtrc being called when key_trdtra is set but key_trdtrc is not set.

15:24 Changeset [4498] by flavoni

fix small improvements in idl plots, see ticket #724

2014-02-17:

15:42 Changeset [4497] by flavoni

update idl scripts, see ticket #724

2014-02-13:

12:49 Ticket #1243 (Advection schemes cause trd_trc to be called when key not set) created by timgraham
When running with passive tracers (using my_trc) and key_trdtra but not …
12:48 Ticket #1242 (Advection schemes cause trd_trc to be called when key not set) created by timgraham
When running with passive tracers (using my_trc) and key_trdtra but not …
11:42 Working Groups/Configuration Manager edited by jpaul
(diff)

2014-02-12:

17:55 Working Groups/Simplification-Robustness edited by gm
(diff)
17:46 Working Groups/Simplification-Robustness edited by gm
(diff)
17:36 Working Groups/Simplification-Robustness edited by gm
(diff)
15:13 2014WP edited by gm
(diff)
14:46 Wiki Start edited by clevy
(diff)
14:19 Working Groups edited by clevy
(diff)
14:19 Working Groups edited by clevy
(diff)
14:17 Working Groups/Simplification-Robustness created by clevy
14:08 Working Groups edited by clevy
(diff)
14:07 Working Groups edited by clevy
(diff)
14:07 Working Groups edited by clevy
(diff)
14:05 Working Groups/HPC created by clevy
12:15 Working Groups edited by clevy
(diff)
12:13 Working Groups/Wave Coupling edited by clevy
(diff)
11:44 Working Groups/Wave Coupling created by clevy
11:18 Working Groups/AGRIF edited by clevy
(diff)
11:14 Working Groups/Configuration Manager edited by clevy
(diff)
11:11 Working Groups/Configuration Manager edited by clevy
(diff)
11:10 Working Groups/Configuration Manager edited by clevy
(diff)
11:05 Working Groups/Data Assimilation edited by clevy
(diff)
10:56 Working Groups edited by clevy
(diff)

2014-02-11:

10:55 Changeset [4496] by jchanut

Fix misplaced call to ts_rst
o-This line, and those below, will be ignored—

M NEMO/OPA_SRC/DYN/dynspg.F90
M NEMO/OPA_SRC/DYN/dynspg_ts.F90

2014-02-10:

16:51 Changeset [4495] by flavoni

commit FRAM strait export for idl plots, see ticket #724

2014-02-07:

13:11 Changeset [4494] by vichi

Small editing of CMCC arch file and restoring of GYRE_BFM configuration that was removed

2014-02-06:

18:56 Changeset [4493] by rfurner

update AMM12 namelist to enable restart from mininmum variables using nn_euler

18:55 Changeset [4492] by rfurner

undo uneccessary land masking in diawri

17:53 Ticket #107 (AGRIF with time-splitting) closed by jchanut
fixed
17:53 Ticket #106 (AGRIF with time-splitting) closed by jchanut
fixed
17:51 Ticket #1203 (Missing Asselin contribution in AGRIF update) closed by jchanut
17:47 Changeset [4491] by jchanut

Missing Asselin correction with Agrif, #1203

17:08 Changeset [4490] by jchanut

Allow starting a vvl run without scale factors arrays

15:33 Changeset [4489] by jchanut

Small compilation pb with TOP and AGRIF

11:43 Changeset [4488] by rfurner

fixes to enable proper calulation of slopes for geopotential diffusion in scoords

2014-02-05:

16:48 Ticket #1223 (Surface pressure gradient error) closed by acc
fixed: Fixed at changeset 4487
16:46 Changeset [4487] by acc

#1223 fix surface pressure gradient typo error in dynspg.F90 for the case of tidal potential forcing with dynspg_flt

16:38 Ticket #1198 (changed variables in restart files in dynspg_ts.F90) closed by rfurner
fixed: New restart created as per instructions from Jerome Chanut.
14:11 2014WP/2014_System Simplification_v2 edited by gm
(diff)
13:59 2014WP/2014_System Simplification_v2 edited by gm
(diff)
12:30 Ticket #1240 (SSH update not compliant with tracer update (AGRIF)) closed by jchanut
fixed
12:23 Changeset [4486] by jchanut

Finalize Time split and AGRIF (tickets #106 and #107) + ticket #1240

2014-02-04:

13:19 Changeset [4485] by trackstand2

Undo early setting of mbkmax because not needed for halo swaps anymore

13:19 Changeset [4484] by trackstand2

Move to O3 compile

13:19 Changeset [4483] by trackstand2

Add key_z_first to GYRE

13:19 Changeset [4482] by trackstand2

Bug fix to use jpkorig in dom_vvl_alloc called by dom_vvl

13:19 Changeset [4481] by trackstand2

Replace jpk with jpkorig in original lbc code

13:19 Changeset [4480] by trackstand2

Remove Dim size msgs from bdy{dta,tides}

13:19 Changeset [4479] by trackstand2

Remove jpkf as un-needed now we just reset jpk instead

13:19 Changeset [4478] by trackstand2

Changes in eosbn2 to make precision of f.p. values explicit

13:19 Changeset [4477] by trackstand2

Add check to catch case where run out of space for domains while partitioning

13:18 Changeset [4476] by trackstand2

Remove col-trimming when halo packing as is broken - recvs need to know about it too and currently they cannot.

13:18 Changeset [4475] by trackstand2

Commented out dump of bathy in domzgr

13:18 Changeset [4474] by trackstand2

Bug fix in bdydta - use jpkorig rather than jpk when reading boundary fields from file

13:18 Changeset [4473] by trackstand2

Bug fix in iom.F90 to use jpkorig instead of jpk when creating tmp array to swap z-ordering prior to write

13:18 Changeset [4472] by trackstand2

Improvements in timing.F90 to try and avoid using dissociated ptrs

13:18 Changeset [4471] by trackstand2

Replace jpk with jpkorig in check on array shape in iom_rp3d

13:18 Changeset [4470] by trackstand2

Replace jpk with jpkorig in zdf_gls_alloc()

13:18 Changeset [4469] by trackstand2

Increase nextra to 4 to solve bathymetry problems when trimming land points

13:18 Changeset [4468] by trackstand2

Put back calc. of mbkmax in dom_zgr.

13:18 Changeset [4467] by trackstand2

Changes to make global depth mask the same as that generated locally later. Increase nextra from 2 to 3 to get 192 PE case to work.

13:18 Changeset [4466] by trackstand2

Tidy commented-out lines that do not use mbkmax in pack/unpack in exchs_generic

13:17 Changeset [4465] by trackstand2

Add fp0 and exceptions checking on hector build

13:17 Changeset [4464] by trackstand2

Add key_z_first

13:17 Changeset [4463] by trackstand2

Use of mbkmax in bdy_dta_fra

13:17 Changeset [4462] by trackstand2

Remove duplicate calc of mbkmax from domzgr

13:17 Changeset [4461] by trackstand2

Remove duplicate calc of mbkmax and add debug check on tmask

13:17 Changeset [4460] by trackstand2

Addition of dbg SUM outputs and alteration of loop limits in dynldfiso and dynldf_bilapg

13:17 Changeset [4459] by trackstand2

Add debug SUM output to dynnxt and Dynamics section of step

13:16 Changeset [4458] by trackstand2

Undo use of mbkmax in getting slope around Mixed Layer in ldfslp

13:16 Changeset [4457] by trackstand2

Add mbkmax and z-first opt to dynhpg (hpg_sco)

13:16 Changeset [4456] by trackstand2

Add timing to div_cur

13:16 Changeset [4455] by trackstand2

Add mbkmax to dyn_nxt

13:16 Changeset [4454] by trackstand2

Use of mbkmax in computing trends in tra_zdf. Might not be exercised

13:16 Changeset [4453] by trackstand2

Removed section timing from dynldf_iso

13:16 Changeset [4452] by trackstand2

Comment-out timings of sections within tra_adv_tvd

13:16 Changeset [4451] by trackstand2

Add use of mbkmax to tra_nxt and traswp

13:16 Changeset [4450] by trackstand2

Add mbkmax in dynvor

13:16 Changeset [4449] by trackstand2

Slight opt for z-first in dyn_vor

13:16 Changeset [4448] by trackstand2

Changes for z-first in dynvor.F90. Unoptimised.

13:15 Changeset [4447] by trackstand2

Added mbkmax to dyn_ldf_iso

13:15 Changeset [4446] by trackstand2

Use of mbkmax in ldf_slp→ldf_slp_mxl

13:15 Changeset [4445] by trackstand2

Use of mbkmax in nonosc

13:15 Changeset [4444] by trackstand2

Use of mbkmax in tra_adv_tvd

13:15 Changeset [4443] by trackstand2

Use of mbkmax in zdfgls

13:15 Changeset [4442] by trackstand2

Changed so that exchs_generic time is NOT subtracted from its parents

13:15 Changeset [4441] by trackstand2

Change timing so Diagnostics section is subtracted from Step time

13:15 Changeset [4440] by trackstand2

Changes to timing calls to better deal with IO-heavy bits

13:15 Changeset [4439] by trackstand2

Added #if defined ARPDBGSUM around SUM dbg output in z-last div_cur

13:14 Changeset [4438] by trackstand2

Protect debug SUM output in dynnxt and sshwzv with ARPDBGSUM

13:14 Changeset [4437] by trackstand2

Trim columns in exchs_generic and init mbkmax in mpp_init3

13:14 Changeset [4436] by trackstand2

Added timing calls

13:14 Changeset [4435] by trackstand2

Removed duplicate lbc_lnk call from bdy_dyn_fla

13:14 Changeset [4434] by trackstand2

Removed erroneous use of bound_exch_list in bdy_dyn_fla

13:14 Changeset [4433] by trackstand2

mbkmax changes in dynspg_ts

13:14 Changeset [4432] by trackstand2

mbkmax changes in dynldf_bilapg

13:14 Changeset [4431] by trackstand2

Use of mbkmax in eosbn2 and trazdf_imp

13:14 Changeset [4430] by trackstand2

Remove use of mbkmax in dynspg_ts

13:14 Changeset [4429] by trackstand2

Fixed missing -1 on a z-loop limit

13:14 Changeset [4428] by trackstand2

Add mbkmax to dynspg_ts and trazdf_imp

13:14 Changeset [4427] by trackstand2

First files changed on last FINISS work package. Stephen's work although
commited by Andy P.

13:13 Changeset [4426] by trackstand2

Corrected jpk to jpkorig when defining z dimension for netcdf

13:13 Changeset [4425] by trackstand2

Removed dump_array calls

13:13 Changeset [4424] by trackstand2

Bug fixes - use jpkorig in allocates instead of jpk

13:13 Changeset [4423] by trackstand2

Remove unused vars from nemogcm

13:13 Changeset [4422] by trackstand2

Remove manual bounds check from exchmod

13:13 Changeset [4421] by trackstand2

Added jpkorig to hold value before z trimming

13:13 Changeset [4420] by trackstand2

New arch file for BGQ

13:13 Changeset [4419] by trackstand2

Explicit zeroing of bdytmask array

13:13 Changeset [4418] by trackstand2

Addition of EXP00 dirs to gitignore

13:13 Changeset [4417] by trackstand2

Added debug SUM outputs to div_cur

13:12 Changeset [4416] by trackstand2

Added debug SUMs to dyn_nxt

13:12 Changeset [4415] by trackstand2

Addition of SUM debug outputs in sshwzv

13:12 Changeset [4414] by trackstand2

Comment out dump_arrays in step

13:12 Changeset [4413] by trackstand2

Remove debug output from stpctl

13:12 Changeset [4412] by trackstand2

Added dump_1drarray()

13:12 Changeset [4411] by trackstand2

arch files for Gnu and PGI on Hector

13:12 Changeset [4410] by trackstand2

Fix to line length for Gnu compiler

13:12 Changeset [4409] by trackstand2

Changes to allow jpk to be modified to deepest level within a subdomain. jpkorig holds original value.

13:12 Changeset [4408] by trackstand2

Fixed bug where ji can go oob if mi1(ii0)==jpi

13:12 Changeset [4407] by trackstand2

Update of partitioner readme file

13:12 Changeset [4406] by trackstand2

Move from jpk to jpkf - trim sub-domains in z

13:11 Changeset [4405] by trackstand2

Add option to switch trimming of sub-domains in z via NEMO_TRIM_DOMZ env var

13:11 Changeset [4404] by trackstand2

Commented-out dump-arrays in stp()

13:11 Changeset [4403] by trackstand2

Added optional atStep arg to dump_array

13:11 Changeset [4402] by trackstand2

Added sub-domain z-trim optimisation to ldfslp

13:11 Changeset [4401] by trackstand2

Put jpkf into traldf_iso and traadv_tvd (inc nonosc)

13:11 Changeset [4400] by trackstand2

Replace jpk with jpkf in bound_exch_generic. Turn on test timing of exchanges

13:11 Changeset [4399] by trackstand2

Add jpkf for deepest wet level of mpp sub-domain

13:11 Changeset [4398] by trackstand2

Last tool built

13:11 Changeset [4397] by trackstand2

Turn off debug output

13:11 Changeset [4396] by trackstand2

WIP on reading grid dims from netcdf

11:36 Ticket #1241 (Missing boundary conditions on vertical mixing variables) created by jchanut
S. Masson reported this one. Vertical mixing schemes that make use of …
11:20 Ticket #1240 (SSH update not compliant with tracer update (AGRIF)) created by jchanut
ssh is updated differently than tracers with AGRIF. This is not a terrific …
10:01 Changeset [4395] by flavoni

update IDL scripts, see ticket: #724

2014-02-03:

17:23 ticket/1217 edited by jchanut
(diff)
14:50 Ticket #1239 (unallocated arrays in daily mean to diurnal cycle code with passive ...) created by acc
There is a problem with unallocated arrays when using ln_dm2dc = .TRUE. …
14:38 Changeset [4394] by flavoni

add time series of FRAM STRAIT, and update IDL plots, see ticket: #724

10:48 Ticket #1206 (Typo in sbccpl.F90?) closed by charris
fixed: Fixed in [4391] (3.4 stable), [4392] (trunk) and [4393] (2013 merge).
10:40 Changeset [4393] by charris

#1206 Fix for bug introduced under #1107.

10:37 Changeset [4392] by charris

#1206 Fix for bug introduced under #1107.

10:31 Changeset [4391] by charris

#1206 Fix for bug introduced under #1107.

2014-02-02:

18:31 Ticket #1237 (bug in fldread when accessing monthly mean files) closed by jamesharle
duplicate: Apologies. I missed that one. Marking as duplicate and closing. James

2014-01-31:

19:41 Ticket #1238 (Bug in volume calculation for tendency diagnostics) created by guziy
In the file dev_v3_4_STABLE_2012/NEMOGCM/NEMO/OPA_SRC/TRD/trdicp.F90, …
16:06 Changeset [4390] by hliu

some more on wadlmt.F90

15:55 Changeset [4389] by hliu

add a missed loop in wadlmt.F90

15:43 Changeset [4388] by cetlod

minor corrections on PISCES namelist parameters

15:35 Ticket #1058 (pb with ln_loglayer and minimum background coefficient) closed by jchanut
fixed
15:33 Ticket #1209 (Time splitting + key_vvl: Call to wzv prior vertical scale factor update) closed by jchanut
fixed
14:48 Changeset [4387] by jchanut

Correct call to dom_vvl_sf_nxt (impacts ztilde and dynspg_flt only): ticket #1209

14:45 Changeset [4386] by jchanut

Typo error for timing

14:43 Changeset [4385] by hliu

1) Modified Wetting and Drying flux limiter part
2) I will apply all the modifications to v3.6beta as soon as everything runs smoothly at this version.

13:50 Ticket #1237 (bug in fldread when accessing monthly mean files) created by jamesharle
The following issue arose when using boundary data that happen to be …

2014-01-30:

18:07 Changeset [4384] by rfurner

removed accidental duplication of ln_loglayer in ref namelist

17:21 Changeset [4383] by rfurner

updates to AMM12 namelist options

2014-01-29:

16:37 Ticket #1234 (fse3t not defined over all points) closed by rfurner
invalid
15:31 Ticket #1236 (Missing namelist variable in OFFLINE) closed by cetlod
fixed
15:30 Changeset [4382] by cetlod

bugfix : read the namelist variable nn_euler, see ticket #1236

15:29 Ticket #1236 (Missing namelist variable in OFFLINE) created by cetlod
The new variable nn_euler is missing in the namelist definition in offline …
15:26 Changeset [4381] by jchanut

bug with log bottom friction and namelist update

14:54 Changeset [4380] by hliu

wetting and drying: some bugs removed from dynspg_ts.F90

14:06 Ticket #1058 (pb with ln_loglayer and minimum background coefficient) reopened by jchanut
12:55 Changeset [4379] by rfurner

small changes to SETTE to suit new AMM input tarfile

12:54 Changeset [4378] by rfurner

mask values before outputing in vvl case, see ticket 1213

12:46 Changeset [4377] by rfurner

small updates to UKMO arch file

2014-01-28:

19:47 Changeset [4376] by hliu

updating wetting/drying filter for explicit time_splitting

14:55 Changeset [4375] by hliu

updated gravity filters

11:45 Ticket #1235 (Division by zero in timing routines) created by ufla
Subroutine wcurrent_info in timing.F90 contains this code: […] However, …
11:38 Ticket #1231 (Numeric problem along the north fold) closed by ufla
invalid: Closing the issue as there is nothing to fix in the code.

2014-01-27:

11:31 Changeset [4374] by jchanut

Fixed small bug in flux form + clean header

2014-01-26:

10:51 Changeset [4373] by epico

new SETTE test for testing XIOS in its 4 modes Attached/Detached?, One/Multiple? with both Low and High resolution.
A modification of BATCH file for each machine is required to enable MPMD jobs. See batch-gfortran_athena_xios as example

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